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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035842 through 18771 annotations produced 1 hits



(CG7504):

Annotation Number : CG7504
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035842
Gbrowse : chr3L:8124896-8130313 (-) // 100.0 //
Probeset : 1629069_at
Accessions : protein= NP_001137907; /// NP_648177;, nucleotide= NM_001144435; /// NM_139920;
Pathway : 0005875 // microtubule associated complex // inferred from direct assay
Interpro : "0003677 // DNA binding // inferred from electronic annotation /// 0004004 // ATP-dependent RNA helicase activity // inf
FlyMine data for FBgn0035842.
Homophila reports that CG7504 is a close match (9e-15) to human gene CATF1;HMN6;IGHMBP2;SMARD1;SMUBP2 (NP_002171), a gene associated with Neuronopathy, distal hereditary motor, type VI, 604320 (3).
TRiP has 1 RNAi stocks for FBgn0035842 available for purchase.
VDRC has 3 RNAi stocks for FBgn0035842 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain22 14 of 4 0.40Down
Head12 21 of 4 0.20Down
Eye26 04 of 4 0.42Down
Thoracicoabdominal ganglion25 24 of 4 0.40Down
Salivary gland17 51 of 4 0.28Down
Crop22 14 of 4 0.40Down
Midgut8 11 of 4 0.10Down
Tubule11 02 of 4 0.20Down
Hindgut16 14 of 4 0.30Down
Heart9 14 of 4 0.16Down
Fat body7 20 of 4 0.12Down
Ovary210 54 of 4 3.30Up
Testis24 14 of 4 0.40Down
Male accessory glands12 11 of 4 0.20Down
Virgin spermatheca4 10 of 4 0.06Down
Mated spermatheca4 10 of 4 0.06Down
Adult carcass6 20 of 4 0.10Down
Larval CNS76 44 of 4 1.20None
Larval Salivary gland7 11 of 4 0.12Down
Larval midgut5 22 of 4 0.08Down
Larval tubule12 13 of 4 0.20Down
Larval hindgut8 03 of 4 0.13Down
Larval fat body14 14 of 4 0.20Down
Larval trachea19 14 of 4 0.31Down
Larval carcass7 01 of 4 0.12Down
S2 cells (growing)57 24 of 4 0.90None
Whole fly63 44 of 4

Looking for FBgn0035842. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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