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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0035844 through 18771 annotations produced 1 hits


Annotation Number : CG13676
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035844
Gbrowse : chr3L:8134965-8144908 (-) // 100.0 //
Probeset : 1632155_at
Accessions : protein= NP_648179;, nucleotide= NM_139922;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0008061 // chitin binding // inferred from electronic annotation
FlyMine data for FBgn0035844.
BDGP gene expression has embryonic in situ data for CG13676: 16 pix of staining in 2 body parts.
TRiP has 2 RNAi stocks for FBgn0035844 available for purchase.
VDRC has 1 RNAi stocks for FBgn0035844 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.10Down
Head5 21 of 4 0.50None
Eye14 34 of 4 1.47None
Thoracicoabdominal ganglion4 11 of 4 0.50Down
Salivary gland11 11 of 4 1.16None
Crop34 44 of 4 3.60Up
Midgut5 10 of 4 0.50Down
Tubule4 00 of 4 0.40Down
Hindgut5 10 of 4 0.60None
Heart5 21 of 4 0.55None
Fat body9 22 of 4 0.93None
Ovary14 04 of 4 1.50Up
Testis10 04 of 4 1.10None
Male accessory glands6 00 of 4 0.70None
Virgin spermatheca5 10 of 4 0.53Down
Mated spermatheca5 21 of 4 0.56None
Adult carcass11 11 of 4 1.20None
Larval CNS15 24 of 4 1.57Up
Larval Salivary gland50 44 of 4 5.25Up
Larval midgut30 74 of 4 3.10None
Larval tubule9 13 of 4 0.90None
Larval hindgut311 344 of 432.18Up
Larval fat body8 21 of 4 0.90None
Larval trachea1314 1334 of 4135.89Up
Larval carcass2038 1034 of 4210.68Up
S2 cells (growing)3 11 of 4 0.33Down
Whole fly9 13 of 4

Looking for FBgn0035844. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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