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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035845 through 18771 annotations produced 2 hits



(CG13675):

Annotation Number : HDC09028
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035845
Gbrowse : chr3L:8156695-8157460 (-) // 100.0 //
Probeset : 1633155_at
Accessions : protein= NP_001097546;, nucleotide= NM_001104076;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0008061 // chitin binding // inferred from electronic annotation
FlyMine data for FBgn0035845.
VDRC has 1 RNAi stocks for FBgn0035845 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.50None
Head2 00 of 4 0.60None
Eye2 10 of 4 0.55None
Thoracicoabdominal ganglion1 00 of 4 0.40None
Salivary gland6 30 of 4 1.57None
Crop3 10 of 4 0.90None
Midgut2 00 of 4 0.60None
Tubule3 00 of 4 0.80None
Hindgut3 10 of 4 0.80None
Heart1 00 of 4 0.31None
Fat body4 40 of 4 1.01None
Ovary2 10 of 4 0.70None
Testis4 00 of 4 1.00None
Male accessory glands1 00 of 4 0.40None
Virgin spermatheca4 10 of 4 1.01None
Mated spermatheca3 10 of 4 0.93None
Adult carcass1 00 of 4 0.40None
Larval CNS1 00 of 4 0.28None
Larval Salivary gland5 20 of 4 1.30None
Larval midgut2 10 of 4 0.70None
Larval tubule2 00 of 4 0.60None
Larval hindgut3 00 of 4 0.74None
Larval fat body6 20 of 4 1.50None
Larval trachea2 20 of 4 0.60None
Larval carcass2 20 of 4 0.67None
S2 cells (growing)3 00 of 4 0.79None
Whole fly4 10 of 4



(CG13675):

Annotation Number : CG13675
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035845
Gbrowse : chr3L:8153653-8154749 (-) // 100.0 //
Probeset : 1636105_at
Accessions : protein= NP_001097546;, nucleotide= NM_001104076;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0008061 // chitin binding // inferred from electronic annotation
FlyMine data for FBgn0035845.
BioGrid reports that CG13675 interacts with CG32514 .
VDRC has 1 RNAi stocks for FBgn0035845 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 01 of 4 0.90None
Head5 13 of 4 1.60None
Eye9 13 of 4 2.78Up
Thoracicoabdominal ganglion2 00 of 4 0.70None
Salivary gland10 70 of 4 2.88None
Crop5 10 of 4 1.70None
Midgut5 00 of 4 1.70None
Tubule4 00 of 4 1.20None
Hindgut5 12 of 4 1.40None
Heart4 11 of 4 1.23None
Fat body9 42 of 4 2.68None
Ovary3 00 of 4 1.10None
Testis1 00 of 4 0.40None
Male accessory glands7 20 of 4 2.10None
Virgin spermatheca8 12 of 4 2.31Up
Mated spermatheca6 11 of 4 1.96None
Adult carcass7 10 of 4 2.10None
Larval CNS3 01 of 4 0.91None
Larval Salivary gland9 20 of 4 2.60None
Larval midgut3 10 of 4 1.03None
Larval tubule6 10 of 4 1.70None
Larval hindgut7 10 of 4 2.02None
Larval fat body3 10 of 4 1.00None
Larval trachea8 24 of 4 2.35Up
Larval carcass10 11 of 4 3.00Up
S2 cells (growing)3 12 of 4 0.91None
Whole fly3 10 of 4

Looking for FBgn0035845. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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