FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0035845 through 18771 annotations produced 2 hits

(CG13675):

Annotation Number : HDC09028
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035845
Gbrowse : chr3L:8156695-8157460 (-) // 100.0 //
Probeset : 1633155_at
Accessions : protein= NP_001097546;, nucleotide= NM_001104076;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0008061 // chitin binding // inferred from electronic annotation
FlyMine data for FBgn0035845.
VDRC has 1 RNAi stocks for FBgn0035845 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	2 ± 0	0 of 4	0.50	None
Head	2 ± 0	0 of 4	0.60	None
Eye	2 ± 1	0 of 4	0.55	None
Thoracicoabdominal ganglion	1 ± 0	0 of 4	0.40	None
Salivary gland	6 ± 3	0 of 4	1.57	None
Crop	3 ± 1	0 of 4	0.90	None
Midgut	2 ± 0	0 of 4	0.60	None
Tubule	3 ± 0	0 of 4	0.80	None
Hindgut	3 ± 1	0 of 4	0.80	None
Heart	1 ± 0	0 of 4	0.31	None
Fat body	4 ± 4	0 of 4	1.01	None
Ovary	2 ± 1	0 of 4	0.70	None
Testis	4 ± 0	0 of 4	1.00	None
Male accessory glands	1 ± 0	0 of 4	0.40	None
Virgin spermatheca	4 ± 1	0 of 4	1.01	None
Mated spermatheca	3 ± 1	0 of 4	0.93	None
Adult carcass	1 ± 0	0 of 4	0.40	None
Larval CNS	1 ± 0	0 of 4	0.28	None
Larval Salivary gland	5 ± 2	0 of 4	1.30	None
Larval midgut	2 ± 1	0 of 4	0.70	None
Larval tubule	2 ± 0	0 of 4	0.60	None
Larval hindgut	3 ± 0	0 of 4	0.74	None
Larval fat body	6 ± 2	0 of 4	1.50	None
Larval trachea	2 ± 2	0 of 4	0.60	None
Larval carcass	2 ± 2	0 of 4	0.67	None
S2 cells (growing)	3 ± 0	0 of 4	0.79	None
Whole fly	4 ± 1	0 of 4

(CG13675):

Annotation Number : CG13675
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035845
Gbrowse : chr3L:8153653-8154749 (-) // 100.0 //
Probeset : 1636105_at
Accessions : protein= NP_001097546;, nucleotide= NM_001104076;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0008061 // chitin binding // inferred from electronic annotation
FlyMine data for FBgn0035845.
BioGrid reports that CG13675 interacts with CG32514 .
VDRC has 1 RNAi stocks for FBgn0035845 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	3 ± 0	1 of 4	0.90	None
Head	5 ± 1	3 of 4	1.60	None
Eye	9 ± 1	3 of 4	2.78	Up
Thoracicoabdominal ganglion	2 ± 0	0 of 4	0.70	None
Salivary gland	10 ± 7	0 of 4	2.88	None
Crop	5 ± 1	0 of 4	1.70	None
Midgut	5 ± 0	0 of 4	1.70	None
Tubule	4 ± 0	0 of 4	1.20	None
Hindgut	5 ± 1	2 of 4	1.40	None
Heart	4 ± 1	1 of 4	1.23	None
Fat body	9 ± 4	2 of 4	2.68	None
Ovary	3 ± 0	0 of 4	1.10	None
Testis	1 ± 0	0 of 4	0.40	None
Male accessory glands	7 ± 2	0 of 4	2.10	None
Virgin spermatheca	8 ± 1	2 of 4	2.31	Up
Mated spermatheca	6 ± 1	1 of 4	1.96	None
Adult carcass	7 ± 1	0 of 4	2.10	None
Larval CNS	3 ± 0	1 of 4	0.91	None
Larval Salivary gland	9 ± 2	0 of 4	2.60	None
Larval midgut	3 ± 1	0 of 4	1.03	None
Larval tubule	6 ± 1	0 of 4	1.70	None
Larval hindgut	7 ± 1	0 of 4	2.02	None
Larval fat body	3 ± 1	0 of 4	1.00	None
Larval trachea	8 ± 2	4 of 4	2.35	Up
Larval carcass	10 ± 1	1 of 4	3.00	Up
S2 cells (growing)	3 ± 1	2 of 4	0.91	None
Whole fly	3 ± 1	0 of 4

Looking for FBgn0035845. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720