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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035847 through 18771 annotations produced 2 hits



Mth-like 7 (mthl7):

Annotation Number : CG7476
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035847
Gbrowse : chr3L:8171774-8173614 (-) // 100.0 //
Probeset : 1632321_a_at
Accessions : protein= NP_648181; /// NP_788475;, nucleotide= NM_139924; /// NM_176297;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0035847.
TRiP has 1 RNAi stocks for FBgn0035847 available for purchase.
VDRC has 3 RNAi stocks for FBgn0035847 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.60None
Head0 00 of 4 0.50None
Eye1 00 of 4 1.14None
Thoracicoabdominal ganglion0 00 of 4 0.50None
Salivary gland6 40 of 4 3.89None
Crop3 10 of 4 2.30None
Midgut1 00 of 4 1.20None
Tubule47 100 of 429.90Up
Hindgut3 10 of 4 1.90None
Heart1 00 of 4 0.62None
Fat body1 10 of 4 0.86None
Ovary0 00 of 4 0.50None
Testis0 00 of 4 0.30None
Male accessory glands2 10 of 4 1.50None
Virgin spermatheca1 00 of 4 0.59None
Mated spermatheca1 10 of 4 1.17None
Adult carcass2 10 of 4 1.70None
Larval CNS0 00 of 4 0.59None
Larval Salivary gland0 00 of 4 0.55None
Larval midgut1 00 of 4 0.88None
Larval tubule3 10 of 4 2.00None
Larval hindgut0 00 of 4 0.48None
Larval fat body2 00 of 4 1.30None
Larval trachea1 10 of 4 1.20None
Larval carcass4 10 of 4 3.06None
S2 cells (growing)0 00 of 4 0.50None
Whole fly1 00 of 4



Mth-like 7 (mthl7):

Annotation Number : CG7476
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035847
Gbrowse : chr3L:8171774-8173614 (-) // 100.0 //
Probeset : 1629067_at
Accessions : protein= NP_648181; /// NP_788475;, nucleotide= NM_139924; /// NM_176297;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0035847.
TRiP has 1 RNAi stocks for FBgn0035847 available for purchase.
VDRC has 3 RNAi stocks for FBgn0035847 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.80None
Head1 00 of 4 1.30None
Eye0 00 of 4 0.25None
Thoracicoabdominal ganglion1 00 of 4 1.20None
Salivary gland2 00 of 4 1.92None
Crop2 10 of 4 1.80None
Midgut2 00 of 4 2.10None
Tubule2 00 of 4 1.60Up
Hindgut0 00 of 4 0.70None
Heart0 00 of 4 0.68None
Fat body2 10 of 4 2.09None
Ovary1 00 of 4 0.70None
Testis1 00 of 4 1.20None
Male accessory glands3 10 of 4 2.50None
Virgin spermatheca1 00 of 4 0.72None
Mated spermatheca1 00 of 4 1.42None
Adult carcass3 10 of 4 2.60None
Larval CNS1 00 of 4 1.43None
Larval Salivary gland5 10 of 4 4.42Up
Larval midgut2 10 of 4 2.06None
Larval tubule1 00 of 4 1.30None
Larval hindgut1 00 of 4 1.11None
Larval fat body1 00 of 4 0.90None
Larval trachea1 10 of 4 0.98None
Larval carcass1 00 of 4 1.26None
S2 cells (growing)1 00 of 4 1.49None
Whole fly1 00 of 4

Looking for FBgn0035847. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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