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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035854 through 18771 annotations produced 1 hits



(CG8005):

Annotation Number : CG8005
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035854
Gbrowse : chr3L:8191308-8192818 (+) // 100.0 //
Probeset : 1631965_at
Accessions : protein= NP_648188;, nucleotide= NM_139931;
Pathway : using deoxyhypusine synthase // non-traceable author statement /// 0050983 // spermidine catabolic process to deoxyhypu
Interpro : using deoxyhypusine synthase // inferred from electronic annotation"
FlyMine data for FBgn0035854.
TRiP has 1 RNAi stocks for FBgn0035854 available for purchase.
VDRC has 2 RNAi stocks for FBgn0035854 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain58 ± 34 of 4 0.80Down
Head41 ± 34 of 4 0.60Down
Eye30 ± 24 of 4 0.42Down
Thoracicoabdominal ganglion52 ± 24 of 4 0.70Down
Salivary gland57 ± 84 of 4 0.78None
Crop31 ± 24 of 4 0.40Down
Midgut79 ± 84 of 4 1.10None
Tubule66 ± 94 of 4 0.90None
Hindgut47 ± 24 of 4 0.60Down
Heart32 ± 24 of 4 0.44Down
Fat body47 ± 74 of 4 0.65Down
Ovary105 ± 44 of 4 1.40Up
Testis19 ± 14 of 4 0.30Down
Male accessory glands80 ± 44 of 4 1.10None
Virgin spermatheca43 ± 44 of 4 0.59Down
Mated spermatheca47 ± 24 of 4 0.65Down
Adult carcass39 ± 42 of 4 0.50Down
Larval CNS114 ± 84 of 4 1.55Up
Larval Salivary gland84 ± 14 of 4 1.15None
Larval midgut47 ± 44 of 4 0.64Down
Larval tubule30 ± 14 of 4 0.40Down
Larval hindgut61 ± 24 of 4 0.84None
Larval fat body19 ± 10 of 4 0.30Down
Larval trachea110 ± 194 of 4 1.49Up
Larval carcass72 ± 74 of 4 0.98None
S2 cells (growing)114 ± 34 of 4 1.56Up
Whole fly73 ± 54 of 4

Looking for FBgn0035854. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime