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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035856 through 18771 annotations produced 3 hits



(CG13679):

Annotation Number : CG13679
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035856
Gbrowse : chr3L:8195739-8196446 (+) // 100.0 //
Probeset : 1632722_x_at
Accessions : protein= NP_648190; /// NP_729345;, nucleotide= NM_139933; /// NM_168260;
FlyMine data for FBgn0035856.
BDGP gene expression has embryonic in situ data for CG13679: 4 pix of staining in 1 body parts.
BioGrid reports that CG13679 interacts with CG8414 .
VDRC has 2 RNAi stocks for FBgn0035856 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 00 of 4 4.00Up
Head1 00 of 4 1.00None
Eye2 10 of 4 1.80None
Thoracicoabdominal ganglion4 10 of 4 4.20None
Salivary gland11 40 of 410.11None
Crop2 10 of 4 1.80None
Midgut1 00 of 4 1.00None
Tubule1 00 of 4 1.40None
Hindgut0 00 of 4 0.70None
Heart1 00 of 4 1.04None
Fat body0 00 of 4 0.70None
Ovary0 00 of 4 0.60None
Testis1 00 of 4 0.90None
Male accessory glands2 10 of 4 1.70None
Virgin spermatheca0 00 of 4 0.52None
Mated spermatheca0 00 of 4 0.59None
Adult carcass1 00 of 4 0.90None
Larval CNS4 00 of 4 3.63Up
Larval Salivary gland1 00 of 4 0.87None
Larval midgut0 00 of 4 0.50None
Larval tubule0 00 of 4 0.50None
Larval hindgut0 00 of 4 0.63None
Larval fat body1 00 of 4 1.30None
Larval trachea1 10 of 4 1.09None
Larval carcass0 00 of 4 0.43None
S2 cells (growing)1 00 of 4 1.15None
Whole fly1 00 of 4



(CG13679):

Annotation Number : CG13679
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035856
Gbrowse : chr3L:8195739-8196446 (+) // 100.0 //
Probeset : 1636778_at
Accessions : protein= NP_648190; /// NP_729345;, nucleotide= NM_139933; /// NM_168260;
FlyMine data for FBgn0035856.
BDGP gene expression has embryonic in situ data for CG13679: 4 pix of staining in 1 body parts.
BioGrid reports that CG13679 interacts with CG8414 .
VDRC has 2 RNAi stocks for FBgn0035856 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 00 of 4 8.20Up
Head1 00 of 4 2.00None
Eye0 00 of 4 0.87None
Thoracicoabdominal ganglion5 10 of 4 7.30Up
Salivary gland13 30 of 418.03Up
Crop1 00 of 4 1.80None
Midgut1 00 of 4 1.50None
Tubule1 00 of 4 2.20Up
Hindgut1 00 of 4 1.80None
Heart0 00 of 4 0.60None
Fat body0 00 of 4 1.23None
Ovary0 00 of 4 0.40None
Testis3 00 of 4 5.20Up
Male accessory glands1 00 of 4 1.50None
Virgin spermatheca0 00 of 4 0.70None
Mated spermatheca1 00 of 4 1.40None
Adult carcass4 20 of 4 6.10None
Larval CNS2 10 of 4 2.83None
Larval Salivary gland3 10 of 4 4.97None
Larval midgut0 00 of 4 0.77None
Larval tubule1 00 of 4 2.20None
Larval hindgut0 00 of 4 1.17None
Larval fat body0 00 of 4 1.20None
Larval trachea1 10 of 4 2.43None
Larval carcass0 00 of 4 0.90None
S2 cells (growing)1 00 of 4 2.03None
Whole fly0 00 of 4



(CG13679):

Annotation Number : CG13679
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035856
Gbrowse : chr3L:8195893-8196446 (+) // 100.0 //
Probeset : 1631354_x_at
Accessions : protein= NP_648190; /// NP_729345;, nucleotide= NM_139933; /// NM_168260;
FlyMine data for FBgn0035856.
BDGP gene expression has embryonic in situ data for CG13679: 4 pix of staining in 1 body parts.
BioGrid reports that CG13679 interacts with CG8414 .
VDRC has 2 RNAi stocks for FBgn0035856 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain20 14 of 4 0.50Down
Head9 12 of 4 0.20Down
Eye5 11 of 4 0.13Down
Thoracicoabdominal ganglion20 24 of 4 0.50Down
Salivary gland22 01 of 4 0.53None
Crop7 20 of 4 0.20Down
Midgut10 21 of 4 0.20Down
Tubule7 00 of 4 0.20Down
Hindgut8 11 of 4 0.20Down
Heart1 00 of 4 0.03Down
Fat body12 13 of 4 0.29Down
Ovary6 03 of 4 0.20Down
Testis164 64 of 4 4.00Up
Male accessory glands9 10 of 4 0.20Down
Virgin spermatheca5 01 of 4 0.13Down
Mated spermatheca8 10 of 4 0.21Down
Adult carcass14 51 of 4 0.30Down
Larval CNS11 14 of 4 0.27Down
Larval Salivary gland11 22 of 4 0.27Down
Larval midgut9 12 of 4 0.23Down
Larval tubule5 10 of 4 0.10Down
Larval hindgut6 01 of 4 0.15Down
Larval fat body33 123 of 4 0.80None
Larval trachea13 24 of 4 0.33Down
Larval carcass15 13 of 4 0.38Down
S2 cells (growing)8 12 of 4 0.21Down
Whole fly41 64 of 4

Looking for FBgn0035856. 3 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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