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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035859 through 18771 annotations produced 1 hits



(CG13678):

Annotation Number : CG13678
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035859
Gbrowse : chr3L:8215242-8216051 (+) // 100.0 //
Probeset : 1640500_at
Accessions : protein= NP_648193;, nucleotide= NM_139936;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0035859.
BDGP gene expression has embryonic in situ data for CG13678: 4 pix of staining in 1 body parts.
BioGrid reports that CG13678 interacts with CG14840 CG31094 .
VDRC has 3 RNAi stocks for FBgn0035859 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 02 of 4 0.20Down
Head6 11 of 4 0.30Down
Eye504 1974 of 423.61None
Thoracicoabdominal ganglion5 11 of 4 0.20Down
Salivary gland12 41 of 4 0.56None
Crop5 10 of 4 0.20Down
Midgut3 10 of 4 0.20Down
Tubule4 00 of 4 0.20Down
Hindgut4 10 of 4 0.20Down
Heart14 54 of 4 0.68None
Fat body10 41 of 4 0.50None
Ovary1 00 of 4 0.10Down
Testis4 00 of 4 0.20Down
Male accessory glands3 00 of 4 0.10Down
Virgin spermatheca3 10 of 4 0.14Down
Mated spermatheca4 00 of 4 0.21Down
Adult carcass10 20 of 4 0.50None
Larval CNS130 214 of 4 6.11Up
Larval Salivary gland9 21 of 4 0.44None
Larval midgut8 22 of 4 0.41Down
Larval tubule3 11 of 4 0.10Down
Larval hindgut19 24 of 4 0.91None
Larval fat body2 10 of 4 0.10Down
Larval trachea5524 2944 of 4258.44Up
Larval carcass242 214 of 411.34Up
S2 cells (growing)1 00 of 4 0.07Down
Whole fly21 43 of 4

Looking for FBgn0035859. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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