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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0035861 through 18771 annotations produced 1 hits


Annotation Number : CG7213
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035861
Gbrowse : chr3L:8224913-8233577 (-) // 100.0 //
Probeset : 1634559_at
Accessions : protein= NP_648195;, nucleotide= NM_139938;
FlyMine data for FBgn0035861.
VDRC has 4 RNAi stocks for FBgn0035861 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.60None
Head2 00 of 4 1.20None
Eye6 10 of 4 2.99Up
Thoracicoabdominal ganglion1 00 of 4 0.70None
Salivary gland4 10 of 4 2.12None
Crop1 00 of 4 0.60None
Midgut1 00 of 4 0.50None
Tubule1 00 of 4 0.80None
Hindgut0 00 of 4 0.40None
Heart1 00 of 4 0.48None
Fat body1 00 of 4 0.69None
Ovary1 00 of 4 0.50None
Testis16 14 of 4 7.30Up
Male accessory glands1 00 of 4 0.50None
Virgin spermatheca2 00 of 4 0.93None
Mated spermatheca1 00 of 4 0.51None
Adult carcass1 00 of 4 0.60None
Larval CNS1 00 of 4 0.48None
Larval Salivary gland4 10 of 4 1.87None
Larval midgut1 00 of 4 0.71None
Larval tubule0 00 of 4 0.30None
Larval hindgut1 00 of 4 0.53None
Larval fat body3 10 of 4 1.60None
Larval trachea2 20 of 4 1.19None
Larval carcass2 10 of 4 1.31None
S2 cells (growing)1 00 of 4 0.52None
Whole fly2 00 of 4

Looking for FBgn0035861. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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