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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035867 through 18771 annotations produced 1 hits



(CG13671):

Annotation Number : CG13671
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035867
Gbrowse : chr3L:8292790-8295446 (+) // 100.0 //
Probeset : 1631729_at
Accessions : protein= NP_648202;, nucleotide= NM_139945;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0035867.
BioGrid reports that CG13671 interacts with CG6519 .
VDRC has 1 RNAi stocks for FBgn0035867 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain69 ± 44 of 4 1.20None
Head67 ± 24 of 4 1.10None
Eye90 ± 44 of 4 1.51Up
Thoracicoabdominal ganglion84 ± 54 of 4 1.40Up
Salivary gland105 ± 24 of 4 1.74Up
Crop52 ± 34 of 4 0.90None
Midgut56 ± 14 of 4 0.90None
Tubule46 ± 34 of 4 0.80Down
Hindgut70 ± 34 of 4 1.20None
Heart63 ± 34 of 4 1.05None
Fat body77 ± 54 of 4 1.29Up
Ovary121 ± 34 of 4 2.00Up
Testis16 ± 14 of 4 0.30Down
Male accessory glands125 ± 64 of 4 2.10Up
Virgin spermatheca101 ± 64 of 4 1.69Up
Mated spermatheca85 ± 64 of 4 1.41Up
Adult carcass49 ± 54 of 4 0.80None
Larval CNS65 ± 54 of 4 1.09None
Larval Salivary gland92 ± 24 of 4 1.53Up
Larval midgut32 ± 04 of 4 0.54Down
Larval tubule49 ± 34 of 4 0.80None
Larval hindgut57 ± 24 of 4 0.96None
Larval fat body51 ± 44 of 4 0.90None
Larval trachea53 ± 64 of 4 0.88None
Larval carcass72 ± 24 of 4 1.20Up
S2 cells (growing)179 ± 34 of 4 2.97Up
Whole fly60 ± 34 of 4

Looking for FBgn0035867. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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