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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035868 through 18771 annotations produced 1 hits



(CG7194):

Annotation Number : CG7194
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035868
Gbrowse : chr3L:8295463-8297135 (-) // 100.0 //
Probeset : 1631098_at
Accessions : protein= NP_648203;, nucleotide= NM_139946;
FlyMine data for FBgn0035868.
TRiP has 1 RNAi stocks for FBgn0035868 available for purchase.
VDRC has 2 RNAi stocks for FBgn0035868 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain11 ± 14 of 4 0.10Down
Head26 ± 04 of 4 0.30Down
Eye13 ± 14 of 4 0.16Down
Thoracicoabdominal ganglion10 ± 00 of 4 0.10Down
Salivary gland13 ± 30 of 4 0.17Down
Crop9 ± 22 of 4 0.10Down
Midgut629 ± 414 of 4 7.90Up
Tubule35 ± 44 of 4 0.50Down
Hindgut51 ± 34 of 4 0.70Down
Heart159 ± 34 of 4 2.01Up
Fat body22 ± 44 of 4 0.29Down
Ovary34 ± 24 of 4 0.40Down
Testis196 ± 384 of 4 2.50None
Male accessory glands125 ± 124 of 4 1.60Up
Virgin spermatheca31 ± 24 of 4 0.39Down
Mated spermatheca26 ± 24 of 4 0.33Down
Adult carcass32 ± 24 of 4 0.40Down
Larval CNS27 ± 64 of 4 0.35Down
Larval Salivary gland7 ± 11 of 4 0.09Down
Larval midgut52 ± 14 of 4 0.66Down
Larval tubule30 ± 34 of 4 0.40Down
Larval hindgut20 ± 04 of 4 0.26Down
Larval fat body89 ± 64 of 4 1.10None
Larval trachea29 ± 54 of 4 0.37Down
Larval carcass36 ± 24 of 4 0.45Down
S2 cells (growing)39 ± 44 of 4 0.50Down
Whole fly79 ± 54 of 4

Looking for FBgn0035868. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime