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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035873 through 18771 annotations produced 1 hits



(CG13670):

Annotation Number : CG13670
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035873
Gbrowse : chr3L:8313935-8315294 (+) // 100.0 //
Probeset : 1636078_at
Accessions : protein= NP_648207;, nucleotide= NM_139950;
Interpro : 0008010 // structural constituent of chitin-based larval cuticle // inferred from sequence or structural similarity ///
FlyMine data for FBgn0035873.
VDRC has 2 RNAi stocks for FBgn0035873 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.20None
Head32 ± 13 of 4 7.30Up
Eye180 ± 294 of 440.88Up
Thoracicoabdominal ganglion1 ± 00 of 4 0.30None
Salivary gland2 ± 00 of 4 0.50None
Crop4 ± 10 of 4 1.00None
Midgut8 ± 20 of 4 1.90None
Tubule2 ± 00 of 4 0.50Down
Hindgut3 ± 10 of 4 0.80None
Heart3 ± 00 of 4 0.68None
Fat body2 ± 10 of 4 0.55None
Ovary2 ± 10 of 4 0.50None
Testis4 ± 00 of 4 1.10None
Male accessory glands11 ± 40 of 4 2.50None
Virgin spermatheca1 ± 00 of 4 0.33None
Mated spermatheca3 ± 20 of 4 0.71None
Adult carcass4 ± 30 of 4 1.10None
Larval CNS3 ± 20 of 4 0.79None
Larval Salivary gland3 ± 10 of 4 0.88None
Larval midgut6 ± 20 of 4 1.36None
Larval tubule4 ± 20 of 4 1.10None
Larval hindgut1 ± 00 of 4 0.35None
Larval fat body1 ± 00 of 4 0.40None
Larval trachea6 ± 31 of 4 1.38None
Larval carcass3 ± 10 of 4 0.82None
S2 cells (growing)2 ± 00 of 4 0.49None
Whole fly4 ± 10 of 4

Looking for FBgn0035873. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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