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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035877 through 18771 annotations produced 1 hits



(CG7083):

Annotation Number : CG7083
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035877
Gbrowse : chr3L:8333921-8335569 (+) // 100.0 //
Probeset : 1634814_at
Accessions : protein= NP_648211;, nucleotide= NM_139954;
FlyMine data for FBgn0035877.
VDRC has 2 RNAi stocks for FBgn0035877 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain178 84 of 4 1.80Up
Head136 114 of 4 1.40Up
Eye108 64 of 4 1.12None
Thoracicoabdominal ganglion139 74 of 4 1.40Up
Salivary gland180 74 of 4 1.85Up
Crop193 94 of 4 2.00Up
Midgut150 24 of 4 1.50Up
Tubule80 54 of 4 0.80Down
Hindgut180 44 of 4 1.90Up
Heart145 84 of 4 1.49Up
Fat body155 234 of 4 1.60Up
Ovary113 44 of 4 1.20None
Testis16 13 of 4 0.20Down
Male accessory glands183 144 of 4 1.90Up
Virgin spermatheca191 144 of 4 1.96Up
Mated spermatheca133 54 of 4 1.37Up
Adult carcass209 144 of 4 2.20Up
Larval CNS60 24 of 4 0.62Down
Larval Salivary gland63 24 of 4 0.65Down
Larval midgut138 184 of 4 1.43None
Larval tubule212 134 of 4 2.20Up
Larval hindgut118 114 of 4 1.21None
Larval fat body220 164 of 4 2.30Up
Larval trachea129 334 of 4 1.32None
Larval carcass85 164 of 4 0.88None
S2 cells (growing)66 34 of 4 0.68Down
Whole fly97 74 of 4

Looking for FBgn0035877. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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