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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035879 through 18771 annotations produced 1 hits



(CG7112):

Annotation Number : CG7112
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035879
Gbrowse : chr3L:8340640-8344824 (+) // 100.0 //
Probeset : 1629943_at
Accessions : protein= NP_001097549; /// NP_648213;, nucleotide= NM_001104079; /// NM_139956;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005097 // Rab GTPase activator activity // inferred from sequence or structural similarity /// 0005097 // Rab GTPase ac
FlyMine data for FBgn0035879.
TRiP has 1 RNAi stocks for FBgn0035879 available for purchase.
VDRC has 2 RNAi stocks for FBgn0035879 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain115 34 of 4 1.20Up
Head95 34 of 4 1.00None
Eye89 24 of 4 0.91Down
Thoracicoabdominal ganglion122 44 of 4 1.30Up
Salivary gland329 74 of 4 3.39Up
Crop161 54 of 4 1.70Up
Midgut111 44 of 4 1.10None
Tubule57 14 of 4 0.60Down
Hindgut154 34 of 4 1.60Up
Heart130 14 of 4 1.34Up
Fat body60 44 of 4 0.62Down
Ovary141 34 of 4 1.50Up
Testis106 24 of 4 1.10Up
Male accessory glands134 74 of 4 1.40Up
Virgin spermatheca94 54 of 4 0.97None
Mated spermatheca95 64 of 4 0.98None
Adult carcass89 74 of 4 0.90None
Larval CNS144 84 of 4 1.49Up
Larval Salivary gland283 104 of 4 2.91Up
Larval midgut101 84 of 4 1.05None
Larval tubule69 24 of 4 0.70Down
Larval hindgut138 84 of 4 1.42Up
Larval fat body78 24 of 4 0.80Down
Larval trachea105 144 of 4 1.08None
Larval carcass142 114 of 4 1.46Up
S2 cells (growing)225 24 of 4 2.32Up
Whole fly97 24 of 4

Looking for FBgn0035879. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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