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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0035886 through 18771 annotations produced 1 hits

Jonah 66C (Jon66Ci):

Annotation Number : CG7118
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035886
Gbrowse : chr3L:8384641-8385479 (+) // 100.0 //
Probeset : 1625538_at
Accessions : protein= NP_729372;, nucleotide= NM_168271;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004016 // adenylate cyclase activity // non-tr
FlyMine data for FBgn0035886.
BDGP gene expression has embryonic in situ data for CG7118: 4 pix of staining in 1 body parts.
Homophila reports that CG7118 is a close match (8e-12) to human gene MASP2 (NP_006601), a gene associated with MASP2 deficiency (3).
VDRC has 3 RNAi stocks for FBgn0035886 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain10 12 of 4 0.00Down
Head12 20 of 4 0.10Down
Eye19 51 of 4 0.08Down
Thoracicoabdominal ganglion12 11 of 4 0.10Down
Salivary gland18 40 of 4 0.08Down
Crop14 21 of 4 0.10Down
Midgut1876 224 of 4 8.00Up
Tubule9 00 of 4 0.00Down
Hindgut15 21 of 4 0.10Down
Heart6 10 of 4 0.03Down
Fat body16 40 of 4 0.07Down
Ovary5 20 of 4 0.00Down
Testis3 10 of 4 0.00Down
Male accessory glands14 21 of 4 0.10Down
Virgin spermatheca10 00 of 4 0.05Down
Mated spermatheca15 12 of 4 0.07Down
Adult carcass21 11 of 4 0.10Down
Larval CNS32 342 of 4 0.14Down
Larval Salivary gland24 12 of 4 0.10Down
Larval midgut5984 1794 of 425.63Up
Larval tubule11 11 of 4 0.00Down
Larval hindgut26 33 of 4 0.12Down
Larval fat body8 30 of 4 0.00Down
Larval trachea9 71 of 4 0.04Down
Larval carcass17 90 of 4 0.08Down
S2 cells (growing)15 11 of 4 0.07Down
Whole fly233 624 of 4

Looking for FBgn0035886. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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