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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0035887 through 18771 annotations produced 1 hits

Jonah 66C (Jon66Cii):

Annotation Number : CG7170
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035887
Gbrowse : chr3L:8385957-8386749 (-) // 100.0 //
Probeset : 1641052_at
Accessions : protein= NP_648217;, nucleotide= NM_139960;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0035887.
Homophila reports that CG7170 is a close match (8e-11) to human gene F9;HEMB (NP_000124), a gene associated with Hemophilia B, 306900 (3).
TRiP has 1 RNAi stocks for FBgn0035887 available for purchase.
VDRC has 3 RNAi stocks for FBgn0035887 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 00 of 4 0.10Down
Head6 00 of 4 0.10Down
Eye7 30 of 4 0.17Down
Thoracicoabdominal ganglion8 10 of 4 0.20Down
Salivary gland10 40 of 4 0.24Down
Crop10 00 of 4 0.20Down
Midgut519 234 of 412.10Up
Tubule7 10 of 4 0.20Down
Hindgut14 13 of 4 0.30None
Heart6 10 of 4 0.16Down
Fat body10 50 of 4 0.25Down
Ovary8 10 of 4 0.20Down
Testis1 00 of 4 0.00Down
Male accessory glands9 30 of 4 0.20Down
Virgin spermatheca7 00 of 4 0.17Down
Mated spermatheca12 10 of 4 0.30None
Adult carcass21 80 of 4 0.50None
Larval CNS12 22 of 4 0.29None
Larval Salivary gland7 10 of 4 0.16Down
Larval midgut6607 2464 of 4153.75Up
Larval tubule12 00 of 4 0.30None
Larval hindgut18 23 of 4 0.42None
Larval fat body10 10 of 4 0.20Down
Larval trachea6 30 of 4 0.16Down
Larval carcass14 11 of 4 0.34None
S2 cells (growing)8 00 of 4 0.19Down
Whole fly43 94 of 4

Looking for FBgn0035887. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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