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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035890 through 18771 annotations produced 1 hits



(CG13667):

Annotation Number : CG13667
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035890
Gbrowse : chr3L:8398531-8400455 (+) // 100.0 //
Probeset : 1632912_s_at
Accessions : protein= NP_648220; /// NP_729378;, nucleotide= NM_139963; /// NM_168274;
Interpro : 0005506 // iron ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physi
FlyMine data for FBgn0035890.
Homophila reports that CG13667 is a close match (2e-21) to human gene NOS3 (NP_000594), a gene associated with {Alzheimer disease, late-onset, susceptibility to}, 104300 (3);{Coronary spasms, susceptibility to} (3);{Hypertension, pregnancy-induced}, 189800 (3);{Hypertension, susceptibility to}, 145500 (3);{Ischemic stroke, susceptibility to}, 601367 (3);{Placental abruption} (3).
BioGrid reports that CG13667 interacts with CG4180 CG2009 .
VDRC has 2 RNAi stocks for FBgn0035890 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain27 14 of 4 0.40Down
Head33 34 of 4 0.40Down
Eye22 14 of 4 0.30Down
Thoracicoabdominal ganglion34 24 of 4 0.50Down
Salivary gland66 63 of 4 0.86None
Crop41 34 of 4 0.50Down
Midgut55 34 of 4 0.70None
Tubule47 24 of 4 0.60Down
Hindgut43 14 of 4 0.60Down
Heart38 14 of 4 0.50Down
Fat body58 34 of 4 0.76None
Ovary69 24 of 4 0.90None
Testis471 174 of 4 6.10Up
Male accessory glands60 24 of 4 0.80None
Virgin spermatheca69 24 of 4 0.90None
Mated spermatheca85 34 of 4 1.11None
Adult carcass41 34 of 4 0.50Down
Larval CNS63 64 of 4 0.83None
Larval Salivary gland85 44 of 4 1.11None
Larval midgut53 14 of 4 0.70Down
Larval tubule56 04 of 4 0.70None
Larval hindgut58 34 of 4 0.77None
Larval fat body88 204 of 4 1.20None
Larval trachea46 104 of 4 0.60Down
Larval carcass45 14 of 4 0.60Down
S2 cells (growing)81 14 of 4 1.06None
Whole fly76 74 of 4

Looking for FBgn0035890. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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