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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035901 through 18771 annotations produced 1 hits



(CG6745):

Annotation Number : CG6745
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035901
Gbrowse : chr3L:8503137-8506104 (+) // 100.0 //
Probeset : 1639873_at
Accessions : protein= NP_648231;, nucleotide= NM_139974;
Interpro : 0003723 // RNA binding // inferred from electronic annotation /// 0004730 // pseudouridylate synthase activity // inferr
FlyMine data for FBgn0035901.
BDGP gene expression has embryonic in situ data for CG6745: 11 pix of staining in 6 body parts.
BioGrid reports that CG6745 interacts with CG6758 CG7041 .
TRiP has 1 RNAi stocks for FBgn0035901 available for purchase.
VDRC has 4 RNAi stocks for FBgn0035901 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain17 ± 14 of 4 0.50Down
Head12 ± 22 of 4 0.30Down
Eye12 ± 01 of 4 0.33Down
Thoracicoabdominal ganglion11 ± 11 of 4 0.30Down
Salivary gland29 ± 43 of 4 0.79None
Crop24 ± 24 of 4 0.60Down
Midgut18 ± 02 of 4 0.50Down
Tubule10 ± 10 of 4 0.30Down
Hindgut14 ± 13 of 4 0.40Down
Heart10 ± 13 of 4 0.28Down
Fat body22 ± 44 of 4 0.59Down
Ovary78 ± 34 of 4 2.10Up
Testis18 ± 04 of 4 0.50Down
Male accessory glands27 ± 13 of 4 0.70Down
Virgin spermatheca18 ± 02 of 4 0.50Down
Mated spermatheca25 ± 24 of 4 0.69Down
Adult carcass14 ± 20 of 4 0.40Down
Larval CNS74 ± 74 of 4 1.99Up
Larval Salivary gland36 ± 14 of 4 0.99None
Larval midgut19 ± 23 of 4 0.51Down
Larval tubule6 ± 10 of 4 0.20Down
Larval hindgut27 ± 34 of 4 0.74None
Larval fat body9 ± 20 of 4 0.30Down
Larval trachea38 ± 34 of 4 1.03None
Larval carcass36 ± 64 of 4 0.98None
S2 cells (growing)43 ± 24 of 4 1.18None
Whole fly37 ± 24 of 4

Looking for FBgn0035901. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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