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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035903 through 18771 annotations produced 1 hits



(CG6765):

Annotation Number : CG6765
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035903
Gbrowse : chr3L:8505865-8511708 (+) // 100.0 //
Probeset : 1639157_at
Accessions : protein= NP_648233;, nucleotide= NM_139976;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from elect
FlyMine data for FBgn0035903.
BDGP gene expression has embryonic in situ data for CG6765: 11 pix of staining in 4 body parts.
VDRC has 2 RNAi stocks for FBgn0035903 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain277 ± 54 of 435.90Up
Head68 ± 84 of 4 8.80Up
Eye36 ± 14 of 4 4.68Up
Thoracicoabdominal ganglion203 ± 44 of 426.40Up
Salivary gland10 ± 20 of 4 1.39None
Crop5 ± 00 of 4 0.70None
Midgut2 ± 10 of 4 0.30Down
Tubule3 ± 00 of 4 0.40Down
Hindgut3 ± 10 of 4 0.40Down
Heart1 ± 00 of 4 0.24Down
Fat body10 ± 23 of 4 1.29None
Ovary2 ± 01 of 4 0.30Down
Testis0 ± 00 of 4 0.10Down
Male accessory glands6 ± 21 of 4 0.90None
Virgin spermatheca4 ± 10 of 4 0.56None
Mated spermatheca6 ± 20 of 4 0.90None
Adult carcass6 ± 21 of 4 0.80None
Larval CNS270 ± 244 of 435.00Up
Larval Salivary gland5 ± 11 of 4 0.73None
Larval midgut3 ± 10 of 4 0.45None
Larval tubule4 ± 00 of 4 0.60None
Larval hindgut5 ± 02 of 4 0.74None
Larval fat body3 ± 20 of 4 0.40None
Larval trachea5 ± 22 of 4 0.72None
Larval carcass5 ± 21 of 4 0.75None
S2 cells (growing)15 ± 24 of 4 2.04Up
Whole fly7 ± 14 of 4

Looking for FBgn0035903. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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