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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035909 through 18771 annotations produced 2 hits



ergic-53 (ergic53):

Annotation Number : CG6822
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035909
Gbrowse : chr3L:8528051-8530697 (+) // 99.81 //
Probeset : 1640635_a_at
Accessions : protein= NP_524776; /// NP_788479;, nucleotide= NM_080037; /// NM_176301;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0005537 // mannose binding // inferred from sequenc
FlyMine data for FBgn0035909.
Homophila reports that CG6822 is a close match (1e-107) to human gene ERGIC53;F5F8D;LMAN1;MCFD1 (NP_005561), a gene associated with Combined factor V and VIII deficiency, 227300 (3).
BioGrid reports that CG6822 interacts with CG1560 .
VDRC has 2 RNAi stocks for FBgn0035909 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain256 ± 24 of 4 0.50Down
Head468 ± 304 of 4 1.00None
Eye306 ± 274 of 4 0.64Down
Thoracicoabdominal ganglion265 ± 84 of 4 0.60Down
Salivary gland2051 ± 1394 of 4 4.29Up
Crop545 ± 54 of 4 1.10Up
Midgut835 ± 164 of 4 1.70Up
Tubule355 ± 404 of 4 0.70Down
Hindgut417 ± 44 of 4 0.90Down
Heart780 ± 334 of 4 1.63Up
Fat body1131 ± 1204 of 4 2.37Up
Ovary452 ± 174 of 4 0.90None
Testis307 ± 104 of 4 0.60Down
Male accessory glands4438 ± 254 of 4 9.30Up
Virgin spermatheca918 ± 344 of 4 1.92Up
Mated spermatheca1083 ± 734 of 4 2.27Up
Adult carcass529 ± 204 of 4 1.10None
Larval CNS443 ± 94 of 4 0.93None
Larval Salivary gland3896 ± 664 of 4 8.16Up
Larval midgut878 ± 524 of 4 1.84Up
Larval tubule568 ± 144 of 4 1.20Up
Larval hindgut685 ± 184 of 4 1.43Up
Larval fat body1045 ± 824 of 4 2.20Up
Larval trachea1335 ± 2344 of 4 2.80Up
Larval carcass1136 ± 1014 of 4 2.38Up
S2 cells (growing)1368 ± 84 of 4 2.86Up
Whole fly477 ± 164 of 4



ergic-53 (ergic53):

Annotation Number : CG6822
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035909
Gbrowse : chr3L:8528051-8531113 (+) // 99.8 //
Probeset : 1624560_at
Accessions : protein= NP_524776; /// NP_788479;, nucleotide= NM_080037; /// NM_176301;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0005537 // mannose binding // inferred from sequenc
FlyMine data for FBgn0035909.
Homophila reports that CG6822 is a close match (1e-107) to human gene ERGIC53;F5F8D;LMAN1;MCFD1 (NP_005561), a gene associated with Combined factor V and VIII deficiency, 227300 (3).
BioGrid reports that CG6822 interacts with CG1560 .
VDRC has 2 RNAi stocks for FBgn0035909 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain286 ± 124 of 4 0.60Down
Head551 ± 254 of 4 1.10None
Eye347 ± 214 of 4 0.69Down
Thoracicoabdominal ganglion316 ± 114 of 4 0.60Down
Salivary gland2737 ± 1184 of 4 5.44Up
Crop584 ± 104 of 4 1.20Up
Midgut914 ± 234 of 4 1.80Up
Tubule281 ± 334 of 4 0.60Down
Hindgut454 ± 84 of 4 0.90Down
Heart747 ± 324 of 4 1.48Up
Fat body1175 ± 834 of 4 2.33Up
Ovary420 ± 294 of 4 0.80None
Testis137 ± 54 of 4 0.30Down
Male accessory glands4097 ± 464 of 4 8.10Up
Virgin spermatheca1925 ± 644 of 4 3.82Up
Mated spermatheca2489 ± 624 of 4 4.94Up
Adult carcass571 ± 204 of 4 1.10Up
Larval CNS574 ± 294 of 4 1.14Up
Larval Salivary gland3251 ± 494 of 4 6.46Up
Larval midgut1015 ± 644 of 4 2.02Up
Larval tubule628 ± 44 of 4 1.20Up
Larval hindgut822 ± 284 of 4 1.63Up
Larval fat body1142 ± 1044 of 4 2.30Up
Larval trachea1080 ± 1974 of 4 2.15Up
Larval carcass1327 ± 934 of 4 2.64Up
S2 cells (growing)1266 ± 44 of 4 2.51Up
Whole fly503 ± 114 of 4

Looking for FBgn0035909. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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