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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035911 through 18771 annotations produced 1 hits



(CG6638):

Annotation Number : CG6638
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035911
Gbrowse : chr3L:8567275-8569173 (-) // 100.0 //
Probeset : 1635996_at
Accessions : protein= NP_648239;, nucleotide= NM_139982;
Pathway : 0005759 // mitochondrial matrix // inferred from sequence or structural similarity
Interpro : "0003995 // acyl-CoA dehydrogenase activity // inferred from electronic annotation /// 0008470 // isovaleryl-CoA dehydro
FlyMine data for FBgn0035911.
Homophila reports that CG6638 is a close match (1e-31) to human gene GCDH (NP_039663), a gene associated with Glutaricaciduria, type I, 231670 (3).
VDRC has 1 RNAi stocks for FBgn0035911 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain30 ± 24 of 4 0.20Down
Head123 ± 54 of 4 0.70Down
Eye110 ± 94 of 4 0.65Down
Thoracicoabdominal ganglion42 ± 34 of 4 0.20Down
Salivary gland176 ± 64 of 4 1.04None
Crop144 ± 34 of 4 0.80Down
Midgut144 ± 44 of 4 0.80Down
Tubule337 ± 264 of 4 2.00Up
Hindgut176 ± 54 of 4 1.00None
Heart440 ± 204 of 4 2.58Up
Fat body520 ± 464 of 4 3.05Up
Ovary213 ± 34 of 4 1.30Up
Testis17 ± 14 of 4 0.10Down
Male accessory glands77 ± 44 of 4 0.50Down
Virgin spermatheca218 ± 134 of 4 1.28Up
Mated spermatheca193 ± 194 of 4 1.13None
Adult carcass295 ± 114 of 4 1.70Up
Larval CNS120 ± 94 of 4 0.71Down
Larval Salivary gland233 ± 104 of 4 1.37Up
Larval midgut201 ± 34 of 4 1.18Up
Larval tubule111 ± 34 of 4 0.70Down
Larval hindgut312 ± 104 of 4 1.83Up
Larval fat body113 ± 134 of 4 0.70Down
Larval trachea231 ± 94 of 4 1.36Up
Larval carcass249 ± 264 of 4 1.46None
S2 cells (growing)76 ± 34 of 4 0.45Down
Whole fly170 ± 24 of 4

Looking for FBgn0035911. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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