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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035915 through 18771 annotations produced 1 hits



(CG6372):

Annotation Number : CG6372
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035915
Gbrowse : chr3L:8610334-8612575 (+) // 100.0 //
Probeset : 1632993_at
Accessions : protein= NP_648244;, nucleotide= NM_139987;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic ann
Interpro : 0004177 // aminopeptidase activity // inferred from sequence or structural similarity /// 0004177 // aminopeptidase acti
FlyMine data for FBgn0035915.
BDGP gene expression has embryonic in situ data for CG6372: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0035915 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain23 14 of 4 0.00Down
Head13 41 of 4 0.00Down
Eye14 23 of 4 0.01Down
Thoracicoabdominal ganglion25 04 of 4 0.00Down
Salivary gland13 20 of 4 0.01Down
Crop4 20 of 4 0.00Down
Midgut4 10 of 4 0.00Down
Tubule13 40 of 4 0.00Down
Hindgut5 10 of 4 0.00Down
Heart3 10 of 4 0.00Down
Fat body10 30 of 4 0.01Down
Ovary3 10 of 4 0.00Down
Testis4002 2354 of 4 2.70Up
Male accessory glands13 21 of 4 0.00Down
Virgin spermatheca12 10 of 4 0.01Down
Mated spermatheca17 41 of 4 0.01Down
Adult carcass41 143 of 4 0.00Down
Larval CNS12 24 of 4 0.01Down
Larval Salivary gland6 10 of 4 0.00Down
Larval midgut9 30 of 4 0.01Down
Larval tubule6 10 of 4 0.00Down
Larval hindgut6 20 of 4 0.00Down
Larval fat body1097 5044 of 4 0.80None
Larval trachea53 852 of 4 0.04Down
Larval carcass7 10 of 4 0.01Down
S2 cells (growing)4 00 of 4 0.00Down
Whole fly1462 1164 of 4

Looking for FBgn0035915. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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