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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035917 through 18771 annotations produced 3 hits



CG6416 (Zasp66):

Annotation Number : CG6416
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035917
Gbrowse : chr3L:8623345-8629820 (+) // 100.0 //
Probeset : 1629383_a_at
Accessions : protein= NP_001163382; /// NP_001163383; /// NP_001163384; /// NP_001163385; /// NP_001163386; /// NP_648246; /// NP_729395; /// NP_729396; /// NP_729398; /// NP_788481; /// NP_788482; /// NP_788483; /// NP_788484;, nucleotide= NM_001169911; /// NM_001169912; /// NM_001169913; /// NM_001169914; /// NM_001169915; /// NM_139989; /// NM_168283; /// NM_168284; /// NM_168286; /// NM_176303; /// NM_176304; /// NM_176305; /// NM_176306;
Pathway : 0030018 // Z disc // inferred from direct assay
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physic
FlyMine data for FBgn0035917.
BDGP gene expression has embryonic in situ data for CG6416: 4 pix of staining in 1 body parts.
BioGrid reports that CG6416 interacts with CG6588 CG7001 CG7109 CG7323 CG8756 CG8849 CG9283 CG9446 CG9699 .
VDRC has 1 RNAi stocks for FBgn0035917 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain38 ± 24 of 4 0.00Down
Head845 ± 864 of 4 0.70Down
Eye130 ± 224 of 4 0.11Down
Thoracicoabdominal ganglion65 ± 164 of 4 0.10Down
Salivary gland24 ± 30 of 4 0.02Down
Crop5033 ± 1144 of 4 4.10Up
Midgut711 ± 94 of 4 0.60Down
Tubule25 ± 10 of 4 0.00Down
Hindgut2324 ± 434 of 4 1.90Up
Heart2092 ± 534 of 4 1.70Up
Fat body77 ± 214 of 4 0.06Down
Ovary71 ± 34 of 4 0.10Down
Testis91 ± 34 of 4 0.10Down
Male accessory glands731 ± 244 of 4 0.60Down
Virgin spermatheca45 ± 54 of 4 0.04Down
Mated spermatheca72 ± 104 of 4 0.06Down
Adult carcass3216 ± 914 of 4 2.60Up
Larval CNS22 ± 53 of 4 0.02Down
Larval Salivary gland23 ± 22 of 4 0.02Down
Larval midgut447 ± 224 of 4 0.36Down
Larval tubule77 ± 34 of 4 0.10Down
Larval hindgut1728 ± 474 of 4 1.41Up
Larval fat body17 ± 40 of 4 0.00Down
Larval trachea308 ± 1734 of 4 0.25Down
Larval carcass4652 ± 3504 of 4 3.79Up
S2 cells (growing)5 ± 00 of 4 0.00Down
Whole fly1228 ± 1204 of 4



CG6416 (Zasp66):

Annotation Number : CG6416
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035917
Gbrowse : chr3L:8623345-8629820 (+) // 100.0 //
Probeset : 1631326_at
Accessions : protein= NP_001163382; /// NP_001163383; /// NP_001163384; /// NP_001163385; /// NP_001163386; /// NP_648246; /// NP_729395; /// NP_729396; /// NP_729398; /// NP_788481; /// NP_788482; /// NP_788483; /// NP_788484;, nucleotide= NM_001169911; /// NM_001169912; /// NM_001169913; /// NM_001169914; /// NM_001169915; /// NM_139989; /// NM_168283; /// NM_168284; /// NM_168286; /// NM_176303; /// NM_176304; /// NM_176305; /// NM_176306;
Pathway : 0030018 // Z disc // inferred from direct assay
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physic
FlyMine data for FBgn0035917.
BDGP gene expression has embryonic in situ data for CG6416: 4 pix of staining in 1 body parts.
BioGrid reports that CG6416 interacts with CG6588 CG7001 CG7109 CG7323 CG8756 CG8849 CG9283 CG9446 CG9699 .
VDRC has 1 RNAi stocks for FBgn0035917 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.10Down
Head6 ± 12 of 4 0.30Down
Eye2 ± 11 of 4 0.13Down
Thoracicoabdominal ganglion6 ± 11 of 4 0.30Down
Salivary gland7 ± 21 of 4 0.38Down
Crop78 ± 64 of 4 3.90Up
Midgut7 ± 21 of 4 0.40Down
Tubule3 ± 00 of 4 0.20Down
Hindgut31 ± 64 of 4 1.60None
Heart19 ± 34 of 4 0.98None
Fat body12 ± 74 of 4 0.63None
Ovary0 ± 00 of 4 0.00Down
Testis1 ± 00 of 4 0.10Down
Male accessory glands7 ± 32 of 4 0.40Down
Virgin spermatheca2 ± 00 of 4 0.12Down
Mated spermatheca6 ± 10 of 4 0.31Down
Adult carcass58 ± 74 of 4 2.90Up
Larval CNS3 ± 02 of 4 0.19Down
Larval Salivary gland5 ± 10 of 4 0.25Down
Larval midgut2 ± 10 of 4 0.14Down
Larval tubule5 ± 11 of 4 0.30Down
Larval hindgut18 ± 14 of 4 0.92None
Larval fat body5 ± 00 of 4 0.30Down
Larval trachea5 ± 33 of 4 0.28Down
Larval carcass79 ± 224 of 4 3.96None
S2 cells (growing)1 ± 00 of 4 0.10Down
Whole fly20 ± 24 of 4



CG6416 (Zasp66):

Annotation Number : CG6416
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035917
Gbrowse : chr3L:8617472-8631773 (+) // 99.77 //
Probeset : 1632121_a_at
Accessions : protein= NP_001163382; /// NP_001163383; /// NP_001163384; /// NP_001163385; /// NP_001163386; /// NP_648246; /// NP_729395; /// NP_729396; /// NP_729398; /// NP_788481; /// NP_788482; /// NP_788483; /// NP_788484;, nucleotide= NM_001169911; /// NM_001169912; /// NM_001169913; /// NM_001169914; /// NM_001169915; /// NM_139989; /// NM_168283; /// NM_168284; /// NM_168286; /// NM_176303; /// NM_176304; /// NM_176305; /// NM_176306;
Pathway : 0030018 // Z disc // inferred from direct assay
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physic
FlyMine data for FBgn0035917.
BDGP gene expression has embryonic in situ data for CG6416: 4 pix of staining in 1 body parts.
BioGrid reports that CG6416 interacts with CG6588 CG7001 CG7109 CG7323 CG8756 CG8849 CG9283 CG9446 CG9699 .
VDRC has 1 RNAi stocks for FBgn0035917 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain58 ± 54 of 4 0.00Down
Head1439 ± 1044 of 4 0.80Down
Eye199 ± 334 of 4 0.11Down
Thoracicoabdominal ganglion100 ± 214 of 4 0.10Down
Salivary gland34 ± 50 of 4 0.02Down
Crop5322 ± 3114 of 4 2.90Up
Midgut934 ± 264 of 4 0.50Down
Tubule68 ± 44 of 4 0.00Down
Hindgut3209 ± 464 of 4 1.80Up
Heart3683 ± 1394 of 4 2.01Up
Fat body206 ± 524 of 4 0.11Down
Ovary92 ± 54 of 4 0.10Down
Testis114 ± 34 of 4 0.10Down
Male accessory glands1472 ± 424 of 4 0.80Down
Virgin spermatheca165 ± 204 of 4 0.09Down
Mated spermatheca278 ± 254 of 4 0.15Down
Adult carcass4458 ± 2364 of 4 2.40Up
Larval CNS31 ± 33 of 4 0.02Down
Larval Salivary gland18 ± 30 of 4 0.01Down
Larval midgut804 ± 494 of 4 0.44Down
Larval tubule84 ± 74 of 4 0.00Down
Larval hindgut2923 ± 524 of 4 1.60Up
Larval fat body15 ± 40 of 4 0.00Down
Larval trachea538 ± 2754 of 4 0.29Down
Larval carcass4966 ± 4104 of 4 2.71Up
S2 cells (growing)1 ± 00 of 4 0.00Down
Whole fly1829 ± 864 of 4

Looking for FBgn0035917. 3 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime