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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035921 through 18771 annotations produced 1 hits



(CG13305):

Annotation Number : CG13305
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035921
Gbrowse : chr3L:8638011-8639918 (-) // 100.0 //
Probeset : 1627825_at
Accessions : protein= NP_001137913; /// NP_648250;, nucleotide= NM_001144441; /// NM_139993;
FlyMine data for FBgn0035921.
BDGP gene expression has embryonic in situ data for CG13305: 20 pix of staining in 7 body parts.
VDRC has 3 RNAi stocks for FBgn0035921 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 10 of 4 1.10None
Head28 ± 54 of 4 7.40Up
Eye197 ± 244 of 451.65Up
Thoracicoabdominal ganglion3 ± 10 of 4 0.90None
Salivary gland13 ± 10 of 4 3.45Up
Crop3 ± 10 of 4 0.90None
Midgut4 ± 10 of 4 1.10None
Tubule5 ± 00 of 4 1.40None
Hindgut3 ± 10 of 4 0.90None
Heart2 ± 00 of 4 0.61None
Fat body5 ± 10 of 4 1.52None
Ovary2 ± 00 of 4 0.70None
Testis2 ± 00 of 4 0.60None
Male accessory glands7 ± 21 of 4 1.80None
Virgin spermatheca4 ± 10 of 4 1.03None
Mated spermatheca3 ± 10 of 4 0.78None
Adult carcass11 ± 20 of 4 3.10None
Larval CNS78 ± 184 of 420.46Up
Larval Salivary gland5 ± 20 of 4 1.39None
Larval midgut6 ± 10 of 4 1.65None
Larval tubule4 ± 10 of 4 1.10None
Larval hindgut6 ± 10 of 4 1.71None
Larval fat body7 ± 30 of 4 1.90None
Larval trachea8 ± 81 of 4 2.17None
Larval carcass4 ± 10 of 4 1.18None
S2 cells (growing)4 ± 10 of 4 1.14None
Whole fly3 ± 10 of 4

Looking for FBgn0035921. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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