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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035922 through 18771 annotations produced 1 hits



(CG6486):

Annotation Number : CG6486
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035922
Gbrowse : chr3L:8642623-8643816 (+) // 100.0 //
Probeset : 1626642_at
Accessions : protein= NP_001137914; /// NP_648251;, nucleotide= NM_001144442; /// NM_139994;
Pathway : engulfment // inferred from mutant phenotype /// 0007031 // peroxisome organization // inferred from sequence or struct
Interpro : 0005777 // peroxisome // inferred from sequence or structural similarity
FlyMine data for FBgn0035922.
Homophila reports that CG6486 is a close match (7e-68) to human gene PEX7;RCDP1 (NP_000279), a gene associated with Refsum disease, 266500 (3);Rhizomelic chondrodysplasia punctata, type 1, 215100 (3).
VDRC has 3 RNAi stocks for FBgn0035922 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.50None
Head2 ± 10 of 4 0.70None
Eye17 ± 33 of 4 4.18Up
Thoracicoabdominal ganglion3 ± 10 of 4 0.90None
Salivary gland4 ± 20 of 4 1.09None
Crop9 ± 21 of 4 2.30None
Midgut8 ± 20 of 4 2.00None
Tubule1 ± 00 of 4 0.40Down
Hindgut5 ± 10 of 4 1.30None
Heart3 ± 10 of 4 0.80None
Fat body1 ± 10 of 4 0.39None
Ovary3 ± 00 of 4 0.90None
Testis0 ± 00 of 4 0.10None
Male accessory glands6 ± 20 of 4 1.60None
Virgin spermatheca3 ± 10 of 4 0.95None
Mated spermatheca2 ± 00 of 4 0.68None
Adult carcass6 ± 20 of 4 1.60None
Larval CNS324 ± 964 of 479.20Up
Larval Salivary gland3 ± 10 of 4 0.77None
Larval midgut2 ± 00 of 4 0.50None
Larval tubule5 ± 20 of 4 1.40None
Larval hindgut3 ± 10 of 4 0.88None
Larval fat body2 ± 00 of 4 0.60None
Larval trachea3 ± 10 of 4 0.90None
Larval carcass2 ± 00 of 4 0.52None
S2 cells (growing)2 ± 00 of 4 0.65None
Whole fly4 ± 10 of 4

Looking for FBgn0035922. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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