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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035923 through 18771 annotations produced 1 hits



(CG6511):

Annotation Number : CG6511
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035923
Gbrowse : chr3L:8714688-8718611 (+) // 100.0 //
Probeset : 1636483_at
Accessions : protein= NP_648252;, nucleotide= NM_139995;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0035923.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain18 14 of 4 0.70None
Head11 23 of 4 0.40Down
Eye9 01 of 4 0.36Down
Thoracicoabdominal ganglion20 24 of 4 0.80None
Salivary gland29 61 of 4 1.13None
Crop17 23 of 4 0.70None
Midgut16 21 of 4 0.60Down
Tubule13 12 of 4 0.50Down
Hindgut21 12 of 4 0.80None
Heart7 14 of 4 0.30Down
Fat body16 13 of 4 0.62Down
Ovary40 14 of 4 1.60Up
Testis45 14 of 4 1.80Up
Male accessory glands23 53 of 4 0.90None
Virgin spermatheca9 03 of 4 0.37Down
Mated spermatheca8 00 of 4 0.32Down
Adult carcass11 40 of 4 0.40Down
Larval CNS30 34 of 4 1.19None
Larval Salivary gland38 24 of 4 1.47Up
Larval midgut12 21 of 4 0.48Down
Larval tubule24 24 of 4 0.90None
Larval hindgut18 24 of 4 0.73None
Larval fat body22 44 of 4 0.90None
Larval trachea13 24 of 4 0.52Down
Larval carcass22 04 of 4 0.87None
S2 cells (growing)58 24 of 4 2.26Up
Whole fly25 34 of 4

Looking for FBgn0035923. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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