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FlyAtlas: the Drosophila gene expression atlas

 University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0035924 through 18771 annotations produced 1 hits


(CG6576):

Annotation Number : CG6576
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035924
Gbrowse : chr3L:8749282-8750086 (+) // 100.0 //
Probeset : 1637415_at
Accessions : protein= NP_648253;, nucleotide= NM_139996;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0035924.
BioGrid reports that CG6576 interacts with CG8207 CG8359 CG9075 CG9436 CG9771 CG9916 .
VDRC has 3 RNAi stocks for FBgn0035924 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head0 ± 00 of 4 0.00Down
Eye0 ± 00 of 4 0.03Down
Thoracicoabdominal ganglion0 ± 00 of 4 0.00Down
Salivary gland1 ± 00 of 4 0.07Down
Crop1 ± 00 of 4 0.00Down
Midgut0 ± 00 of 4 0.00Down
Tubule1 ± 00 of 4 0.00Down
Hindgut1 ± 00 of 4 0.00Down
Heart0 ± 00 of 4 0.02Down
Fat body1 ± 00 of 4 0.07Down
Ovary0 ± 00 of 4 0.00Down
Testis373 ± 94 of 414.30Up
Male accessory glands1 ± 00 of 4 0.00Down
Virgin spermatheca1 ± 00 of 4 0.05Down
Mated spermatheca1 ± 00 of 4 0.04Down
Adult carcass1 ± 00 of 4 0.10Down
Larval CNS0 ± 00 of 4 0.03Down
Larval Salivary gland2 ± 00 of 4 0.08Down
Larval midgut1 ± 00 of 4 0.05Down
Larval tubule0 ± 00 of 4 0.00Down
Larval hindgut0 ± 00 of 4 0.03Down
Larval fat body31 ± 182 of 4 1.20None
Larval trachea1 ± 00 of 4 0.04Down
Larval carcass1 ± 00 of 4 0.05Down
S2 cells (growing)1 ± 00 of 4 0.05Down
Whole fly26 ± 20 of 4

Looking for FBgn0035924. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime