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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035926 through 18771 annotations produced 1 hits



(CG5804):

Annotation Number : CG5804
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035926
Gbrowse : chr3L:8781241-8781640 (-) // 100.0 //
Probeset : 1638246_at
Accessions : protein= NP_648255;, nucleotide= NM_139998;
Interpro : 0000062 // acyl-CoA binding // inferred from sequence or structural similarity /// 0000062 // acyl-CoA binding // inferr
FlyMine data for FBgn0035926.
BDGP gene expression has embryonic in situ data for CG5804: 11 pix of staining in 2 body parts.
VDRC has 2 RNAi stocks for FBgn0035926 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.00Down
Head1 00 of 4 0.00Down
Eye34 243 of 4 0.02Down
Thoracicoabdominal ganglion4 20 of 4 0.00Down
Salivary gland3 00 of 4 0.00Down
Crop8 30 of 4 0.00Down
Midgut5964 1654 of 4 3.40Up
Tubule15 50 of 4 0.00Down
Hindgut1634 2374 of 4 0.90None
Heart5 10 of 4 0.00Down
Fat body3 30 of 4 0.00Down
Ovary3 00 of 4 0.00Down
Testis1 00 of 4 0.00Down
Male accessory glands1 00 of 4 0.00Down
Virgin spermatheca8 21 of 4 0.00Down
Mated spermatheca10 31 of 4 0.01Down
Adult carcass2 00 of 4 0.00Down
Larval CNS2 20 of 4 0.00Down
Larval Salivary gland5 20 of 4 0.00Down
Larval midgut5548 1594 of 4 3.15Up
Larval tubule3 20 of 4 0.00Down
Larval hindgut319 1124 of 4 0.18Down
Larval fat body1 00 of 4 0.00Down
Larval trachea4 30 of 4 0.00Down
Larval carcass3 00 of 4 0.00Down
S2 cells (growing)2 10 of 4 0.00Down
Whole fly1760 1734 of 4

Looking for FBgn0035926. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime