Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035936 through 18771 annotations produced 1 hits



Tetraspanin 66E (Tsp66E):

Annotation Number : CG4999
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035936
Gbrowse : chr3L:8905598-8925165 (+) // 100.0 //
Probeset : 1635267_s_at
Accessions : protein= NP_523985; /// NP_729423; /// NP_729424;, nucleotide= NM_079261; /// NM_168298; /// NM_168299;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
FlyMine data for FBgn0035936.
BDGP gene expression has embryonic in situ data for Tsp66E: 14 pix of staining in 10 body parts.
Homophila reports that CG4999 is a close match (2e-17) to human gene A15;MRX58;MXS1;TM4SF2 (NP_004606), a gene associated with Mental retardation, X-linked 58, 300210 (3).
TRiP has 2 RNAi stocks for FBgn0035936 available for purchase.
VDRC has 3 RNAi stocks for FBgn0035936 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain510 ± 274 of 4 2.60Up
Head222 ± 214 of 4 1.10None
Eye46 ± 14 of 4 0.24Down
Thoracicoabdominal ganglion278 ± 134 of 4 1.40Up
Salivary gland136 ± 104 of 4 0.69Down
Crop177 ± 94 of 4 0.90None
Midgut52 ± 24 of 4 0.30Down
Tubule4 ± 11 of 4 0.00Down
Hindgut43 ± 14 of 4 0.20Down
Heart10 ± 13 of 4 0.05Down
Fat body21 ± 44 of 4 0.11Down
Ovary468 ± 74 of 4 2.30Up
Testis8 ± 14 of 4 0.00Down
Male accessory glands48 ± 64 of 4 0.20Down
Virgin spermatheca77 ± 104 of 4 0.39Down
Mated spermatheca76 ± 74 of 4 0.38Down
Adult carcass62 ± 34 of 4 0.30Down
Larval CNS318 ± 454 of 4 1.60Up
Larval Salivary gland5 ± 12 of 4 0.03Down
Larval midgut21 ± 24 of 4 0.11Down
Larval tubule2 ± 10 of 4 0.00Down
Larval hindgut337 ± 284 of 4 1.69Up
Larval fat body4 ± 10 of 4 0.00Down
Larval trachea84 ± 54 of 4 0.42Down
Larval carcass326 ± 424 of 4 1.64None
S2 cells (growing)23 ± 24 of 4 0.12Down
Whole fly199 ± 84 of 4

Looking for FBgn0035936. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime