FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0035942 through 18771 annotations produced 1 hits

(CG5660):

Annotation Number : CG5660
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035942
Gbrowse : chr3L:8954374-8957763 (-) // 100.0 //
Probeset : 1629427_at
Accessions : protein= NP_648268;, nucleotide= NM_140011;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // in
FlyMine data for FBgn0035942.
BDGP gene expression has embryonic in situ data for CG5660: 10 pix of staining in 8 body parts.
TRiP has 1 RNAi stocks for FBgn0035942 available for purchase.
VDRC has 3 RNAi stocks for FBgn0035942 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	55 ± 2	4 of 4	0.70	Down
Head	27 ± 1	3 of 4	0.30	Down
Eye	23 ± 3	4 of 4	0.30	Down
Thoracicoabdominal ganglion	80 ± 4	4 of 4	1.00	None
Salivary gland	27 ± 4	0 of 4	0.34	Down
Crop	19 ± 0	4 of 4	0.20	Down
Midgut	19 ± 2	2 of 4	0.20	Down
Tubule	22 ± 3	2 of 4	0.30	Down
Hindgut	21 ± 0	3 of 4	0.30	Down
Heart	12 ± 2	3 of 4	0.16	Down
Fat body	25 ± 6	2 of 4	0.32	Down
Ovary	115 ± 4	4 of 4	1.50	Up
Testis	432 ± 7	4 of 4	5.40	Up
Male accessory glands	24 ± 2	1 of 4	0.30	Down
Virgin spermatheca	27 ± 1	3 of 4	0.34	Down
Mated spermatheca	30 ± 2	1 of 4	0.38	Down
Adult carcass	28 ± 3	0 of 4	0.40	Down
Larval CNS	40 ± 3	4 of 4	0.51	Down
Larval Salivary gland	23 ± 0	2 of 4	0.30	Down
Larval midgut	20 ± 2	0 of 4	0.26	Down
Larval tubule	19 ± 2	2 of 4	0.20	Down
Larval hindgut	27 ± 1	3 of 4	0.34	Down
Larval fat body	55 ± 23	3 of 4	0.70	None
Larval trachea	22 ± 4	4 of 4	0.28	Down
Larval carcass	26 ± 3	2 of 4	0.34	Down
S2 cells (growing)	34 ± 1	4 of 4	0.44	Down
Whole fly	79 ± 2	4 of 4

Looking for FBgn0035942. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720