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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035944 through 18771 annotations produced 1 hits



(CG5021):

Annotation Number : CG5021
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035944
Gbrowse : chr3L:8959939-8961484 (+) // 100.0 //
Probeset : 1632417_a_at
Accessions : protein= NP_001163390; /// NP_001163391; /// NP_648270; /// NP_729433;, nucleotide= NM_001169919; /// NM_001169920; /// NM_140013; /// NM_168304;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
FlyMine data for FBgn0035944.
BDGP gene expression has embryonic in situ data for CG5021: 10 pix of staining in 7 body parts.
VDRC has 3 RNAi stocks for FBgn0035944 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain389 ± 104 of 4 0.90None
Head454 ± 164 of 4 1.10None
Eye640 ± 54 of 4 1.50Up
Thoracicoabdominal ganglion462 ± 164 of 4 1.10None
Salivary gland1687 ± 994 of 4 3.96Up
Crop458 ± 44 of 4 1.10None
Midgut735 ± 164 of 4 1.70Up
Tubule700 ± 494 of 4 1.60Up
Hindgut400 ± 94 of 4 0.90None
Heart457 ± 204 of 4 1.07None
Fat body635 ± 294 of 4 1.49Up
Ovary625 ± 34 of 4 1.50Up
Testis282 ± 114 of 4 0.70Down
Male accessory glands2313 ± 604 of 4 5.40Up
Virgin spermatheca941 ± 574 of 4 2.21Up
Mated spermatheca1050 ± 664 of 4 2.46Up
Adult carcass373 ± 354 of 4 0.90None
Larval CNS435 ± 294 of 4 1.02None
Larval Salivary gland1787 ± 314 of 4 4.19Up
Larval midgut858 ± 204 of 4 2.01Up
Larval tubule780 ± 224 of 4 1.80Up
Larval hindgut455 ± 434 of 4 1.07None
Larval fat body620 ± 634 of 4 1.50Up
Larval trachea285 ± 204 of 4 0.67Down
Larval carcass299 ± 194 of 4 0.70Down
S2 cells (growing)757 ± 114 of 4 1.78Up
Whole fly426 ± 334 of 4

Looking for FBgn0035944. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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