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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035947 through 18771 annotations produced 1 hits



chr3L:8968147-8970510 (+) // 100.0 // (Srp68):

Annotation Number : CG5064
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1634672_at
Accessions : protein= , nucleotide= NP_648273;
Pathway : 0006614 // SRP-dependent cotranslational protein targeting to membrane // inferred from sequence or structural similarit
Interpro : "0005737 // cytoplasm // inferred from electronic annotation /// 0005786 // signal recognition particle
FlyMine data for full length.
BioGrid reports that CG5064 interacts with CG5546 CG7737 CG7757 CG9968 CG6121 CG6856 CG8280 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain143 ± 64 of 4 0.40Down
Head273 ± 94 of 4 0.70Down
Eye179 ± 144 of 4 0.48Down
Thoracicoabdominal ganglion139 ± 54 of 4 0.40Down
Salivary gland1433 ± 484 of 4 3.85Up
Crop394 ± 104 of 4 1.10None
Midgut390 ± 124 of 4 1.00None
Tubule268 ± 264 of 4 0.70Down
Hindgut279 ± 44 of 4 0.80Down
Heart352 ± 114 of 4 0.95None
Fat body663 ± 364 of 4 1.78Up
Ovary598 ± 84 of 4 1.60Up
Testis175 ± 24 of 4 0.50Down
Male accessory glands898 ± 174 of 4 2.40Up
Virgin spermatheca384 ± 174 of 4 1.03None
Mated spermatheca438 ± 264 of 4 1.18None
Adult carcass378 ± 44 of 4 1.00None
Larval CNS438 ± 154 of 4 1.18Up
Larval Salivary gland1452 ± 664 of 4 3.90Up
Larval midgut433 ± 194 of 4 1.16None
Larval tubule279 ± 144 of 4 0.80Down
Larval hindgut406 ± 254 of 4 1.09None
Larval fat body497 ± 424 of 4 1.30None
Larval trachea525 ± 864 of 4 1.41Up
Larval carcass585 ± 364 of 4 1.57Up
S2 cells (growing)706 ± 174 of 4 1.90Up
Whole fly372 ± 164 of 4

Looking for FBgn0035947. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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