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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035949 through 18771 annotations produced 1 hits



(CG13314):

Annotation Number : CG13314
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035949
Gbrowse : chr3L:8975822-8976203 (+) // 100.0 //
Probeset : 1637490_at
Accessions : protein= NP_648275;, nucleotide= NM_140018;
FlyMine data for FBgn0035949.
VDRC has 3 RNAi stocks for FBgn0035949 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 02 of 4 0.60Down
Head7 02 of 4 0.60Down
Eye14 13 of 4 1.14None
Thoracicoabdominal ganglion12 13 of 4 1.00None
Salivary gland11 50 of 4 0.92None
Crop12 11 of 4 1.00None
Midgut12 10 of 4 0.90None
Tubule10 00 of 4 0.80Down
Hindgut7 30 of 4 0.60None
Heart13 13 of 4 1.06None
Fat body11 11 of 4 0.88None
Ovary10 11 of 4 0.80None
Testis11 14 of 4 0.90None
Male accessory glands13 21 of 4 1.10None
Virgin spermatheca9 31 of 4 0.75None
Mated spermatheca11 41 of 4 0.90None
Adult carcass11 30 of 4 0.90None
Larval CNS11 34 of 4 0.91None
Larval Salivary gland14 30 of 4 1.15None
Larval midgut9 20 of 4 0.71None
Larval tubule10 21 of 4 0.80None
Larval hindgut13 62 of 4 1.05None
Larval fat body34 63 of 4 2.70Up
Larval trachea313 694 of 424.65Up
Larval carcass83 174 of 4 6.59Up
S2 cells (growing)26 24 of 4 2.07Up
Whole fly12 11 of 4

Looking for FBgn0035949. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime