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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035951 through 18771 annotations produced 1 hits



(CG5068):

Annotation Number : CG5068
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035951
Gbrowse : chr3L:8979811-8981980 (+) // 100.0 //
Probeset : 1637946_at
Accessions : protein= NP_648277;, nucleotide= NM_140020;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from
FlyMine data for FBgn0035951.
BDGP gene expression has embryonic in situ data for CG5068: 4 pix of staining in 1 body parts.
BioGrid reports that CG5068 interacts with CG7379 CG7622 CG8414 .
VDRC has 2 RNAi stocks for FBgn0035951 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain209 34 of 4 2.70Up
Head107 124 of 4 1.40None
Eye68 24 of 4 0.89None
Thoracicoabdominal ganglion191 14 of 4 2.50Up
Salivary gland85 14 of 4 1.11Up
Crop96 24 of 4 1.30Up
Midgut53 24 of 4 0.70Down
Tubule71 14 of 4 0.90Down
Hindgut85 24 of 4 1.10Up
Heart59 24 of 4 0.78Down
Fat body35 24 of 4 0.46Down
Ovary116 64 of 4 1.50Up
Testis41 24 of 4 0.50Down
Male accessory glands50 34 of 4 0.70Down
Virgin spermatheca51 44 of 4 0.67Down
Mated spermatheca53 44 of 4 0.69Down
Adult carcass71 44 of 4 0.90None
Larval CNS182 114 of 4 2.37Up
Larval Salivary gland87 34 of 4 1.14None
Larval midgut41 14 of 4 0.53Down
Larval tubule80 64 of 4 1.00None
Larval hindgut68 44 of 4 0.89None
Larval fat body52 14 of 4 0.70Down
Larval trachea62 44 of 4 0.81Down
Larval carcass64 34 of 4 0.84Down
S2 cells (growing)111 44 of 4 1.45Up
Whole fly76 24 of 4

Looking for FBgn0035951. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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