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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035953 through 18771 annotations produced 1 hits



(CG5087):

Annotation Number : CG5087
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035953
Gbrowse : chr3L:8991285-8995666 (+) // 100.0 //
Probeset : 1623955_at
Accessions : protein= NP_648279;, nucleotide= NM_140022;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0004842 // ubiquitin-protein ligase activity // inferred from sequence or structural similarity /// 0004842 // ubiquitin
FlyMine data for FBgn0035953.
BDGP gene expression has embryonic in situ data for CG5087: 12 pix of staining in 5 body parts.
Homophila reports that CG5087 is a close match (4e-15) to human gene HERC2;SHEP1 (NP_004658), a gene associated with [Skin/hair/eye pigmentation 1, blond/brown hair], 227220 (3);[Skin/hair/eye pigmentation 1, blue/nonblue eyes], 227220 (3).
BioGrid reports that CG5087 interacts with CG5108 CG8472 .
VDRC has 2 RNAi stocks for FBgn0035953 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain130 34 of 4 1.60Up
Head87 14 of 4 1.10None
Eye100 64 of 4 1.21None
Thoracicoabdominal ganglion108 44 of 4 1.30Up
Salivary gland129 64 of 4 1.56Up
Crop103 14 of 4 1.20Up
Midgut98 34 of 4 1.20Up
Tubule78 04 of 4 0.90Down
Hindgut90 34 of 4 1.10None
Heart87 34 of 4 1.05None
Fat body86 74 of 4 1.04None
Ovary171 24 of 4 2.10Up
Testis68 14 of 4 0.80Down
Male accessory glands106 44 of 4 1.30Up
Virgin spermatheca83 34 of 4 1.00None
Mated spermatheca78 34 of 4 0.94None
Adult carcass102 84 of 4 1.20None
Larval CNS100 64 of 4 1.21Up
Larval Salivary gland106 44 of 4 1.28Up
Larval midgut113 54 of 4 1.37Up
Larval tubule100 34 of 4 1.20Up
Larval hindgut126 74 of 4 1.52Up
Larval fat body55 34 of 4 0.70Down
Larval trachea79 114 of 4 0.96None
Larval carcass83 54 of 4 1.01None
S2 cells (growing)118 24 of 4 1.42Up
Whole fly83 14 of 4

Looking for FBgn0035953. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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