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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035954 through 18771 annotations produced 1 hits



Dorsocross3 (Doc3):

Annotation Number : CG5093
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035954
Gbrowse : chr3L:8998297-9000351 (+) // 100.0 //
Probeset : 1629459_at
Accessions : protein= NP_648280;, nucleotide= NM_140023;
Pathway : DNA-dependent // inferred from electronic annotation /// 0035051 // cardiac cell differentiation // inferred from mutan
Interpro : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic
FlyMine data for FBgn0035954.
BDGP gene expression has embryonic in situ data for Doc3: 70 pix of staining in 27 body parts.
Homophila reports that CG5093 is a close match (4e-32) to human gene CPX;TBX22 (NP_001103349), a gene associated with Cleft palate with ankyloglossia, 303400 (3).
BioGrid reports that CG5093 interacts with CG8548 .
TRiP has 1 RNAi stocks for FBgn0035954 available for purchase.
VDRC has 2 RNAi stocks for FBgn0035954 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 00 of 4 0.30Down
Head5 10 of 4 0.50None
Eye3 10 of 4 0.38Down
Thoracicoabdominal ganglion5 10 of 4 0.50None
Salivary gland25 50 of 4 2.40None
Crop7 20 of 4 0.70None
Midgut4 10 of 4 0.40Down
Tubule65 342 of 4 6.30None
Hindgut51 44 of 4 4.90Up
Heart33 34 of 4 3.24Up
Fat body7 11 of 4 0.68None
Ovary5 00 of 4 0.50None
Testis10 02 of 4 1.00None
Male accessory glands2 10 of 4 0.30Down
Virgin spermatheca4 10 of 4 0.46None
Mated spermatheca4 10 of 4 0.42Down
Adult carcass13 21 of 4 1.20None
Larval CNS14 34 of 4 1.34None
Larval Salivary gland9 21 of 4 0.91None
Larval midgut3 00 of 4 0.31Down
Larval tubule64 34 of 4 6.20Up
Larval hindgut35 14 of 4 3.40Up
Larval fat body11 20 of 4 1.10None
Larval trachea7 00 of 4 0.72None
Larval carcass25 23 of 4 2.43Up
S2 cells (growing)7 00 of 4 0.72None
Whole fly10 12 of 4

Looking for FBgn0035954. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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