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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035964 through 18771 annotations produced 1 hits



Dihydropteridine reductase (Dhpr):

Annotation Number : CG4665
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035964
Gbrowse : chr3L:9127660-9129013 (+) // 100.0 //
Probeset : 1641451_at
Accessions : protein= NP_001014579; /// NP_001014580; /// NP_523990;, nucleotide= NM_001014579; /// NM_001014580; /// NM_079266;
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0004155 // 6
FlyMine data for FBgn0035964.
BDGP gene expression has embryonic in situ data for Dhpr: 10 pix of staining in 9 body parts.
Homophila reports that CG4665 is a close match (1e-65) to human gene QDPR;DHPR (NP_000311), a gene associated with Phenylketonuria due to dihydropteridine reductase deficiency (3).
VDRC has 1 RNAi stocks for FBgn0035964 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain263 ± 134 of 4 1.50Up
Head489 ± 434 of 4 2.80Up
Eye234 ± 204 of 4 1.35None
Thoracicoabdominal ganglion323 ± 184 of 4 1.90Up
Salivary gland88 ± 44 of 4 0.51Down
Crop257 ± 114 of 4 1.50Up
Midgut115 ± 64 of 4 0.70Down
Tubule124 ± 34 of 4 0.70Down
Hindgut156 ± 64 of 4 0.90None
Heart206 ± 84 of 4 1.19None
Fat body243 ± 284 of 4 1.40Up
Ovary231 ± 44 of 4 1.30Up
Testis22 ± 14 of 4 0.10Down
Male accessory glands64 ± 24 of 4 0.40Down
Virgin spermatheca487 ± 124 of 4 2.80Up
Mated spermatheca462 ± 384 of 4 2.66Up
Adult carcass321 ± 304 of 4 1.80Up
Larval CNS288 ± 234 of 4 1.66Up
Larval Salivary gland132 ± 44 of 4 0.76None
Larval midgut100 ± 44 of 4 0.58Down
Larval tubule149 ± 94 of 4 0.90None
Larval hindgut268 ± 244 of 4 1.54Up
Larval fat body288 ± 244 of 4 1.70Up
Larval trachea456 ± 1484 of 4 2.63Up
Larval carcass2069 ± 4144 of 411.89Up
S2 cells (growing)112 ± 64 of 4 0.64Down
Whole fly174 ± 174 of 4

Looking for FBgn0035964. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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