Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035971 through 18771 annotations produced 1 hits



(CG4477):

Annotation Number : CG4477
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035971
Gbrowse : chr3L:9243324-9244438 (+) // 100.0 //
Probeset : 1623925_at
Accessions : protein= NP_648295;, nucleotide= NM_140038;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0035971.
BDGP gene expression has embryonic in situ data for CG4477: 4 pix of staining in 1 body parts.
Homophila reports that CG4477 is a close match (2e-11) to human gene F11 (NP_000119), a gene associated with Factor XI deficiency, autosomal dominant (3);Factor XI deficiency, autosomal recessive (3).
VDRC has 3 RNAi stocks for FBgn0035971 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head1 ± 00 of 4 0.00Down
Eye2 ± 00 of 4 0.05Down
Thoracicoabdominal ganglion2 ± 10 of 4 0.10Down
Salivary gland3 ± 10 of 4 0.08Down
Crop1 ± 00 of 4 0.00Down
Midgut1 ± 00 of 4 0.00Down
Tubule0 ± 00 of 4 0.00Down
Hindgut1 ± 00 of 4 0.00Down
Heart2 ± 00 of 4 0.06Down
Fat body3 ± 31 of 4 0.08Down
Ovary0 ± 00 of 4 0.00Down
Testis578 ± 304 of 412.50Up
Male accessory glands3 ± 20 of 4 0.10Down
Virgin spermatheca3 ± 10 of 4 0.08Down
Mated spermatheca6 ± 21 of 4 0.13Down
Adult carcass3 ± 10 of 4 0.10Down
Larval CNS1 ± 10 of 4 0.03Down
Larval Salivary gland1 ± 00 of 4 0.03Down
Larval midgut1 ± 00 of 4 0.04Down
Larval tubule0 ± 00 of 4 0.00Down
Larval hindgut0 ± 00 of 4 0.02Down
Larval fat body72 ± 483 of 4 1.60None
Larval trachea2 ± 20 of 4 0.06Down
Larval carcass0 ± 00 of 4 0.01Down
S2 cells (growing)0 ± 00 of 4 0.02Down
Whole fly46 ± 54 of 4

Looking for FBgn0035971. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime