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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035975 through 18771 annotations produced 1 hits



Peptidoglycan recognition protein LA (PGRP-LA):

Annotation Number : CG32042
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035975
Gbrowse : chr3L:9327432-9331038 (+) // 100.0 //
Probeset : 1625486_a_at
Accessions : protein= NP_996026; /// NP_996027; /// NP_996028; /// NP_996029;, nucleotide= NM_206304; /// NM_206305; /// NM_206306; /// NM_206307;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // non-trac
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0008745 // N-acetylmuramoyl-L-alanine amidase acti
FlyMine data for FBgn0035975.
VDRC has 2 RNAi stocks for FBgn0035975 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain167 84 of 4 3.20Up
Head221 54 of 4 4.20Up
Eye671 484 of 412.72Up
Thoracicoabdominal ganglion149 54 of 4 2.80Up
Salivary gland216 54 of 4 4.10Up
Crop193 24 of 4 3.70Up
Midgut201 54 of 4 3.80Up
Tubule61 24 of 4 1.20Up
Hindgut619 204 of 411.70Up
Heart123 74 of 4 2.35Up
Fat body36 44 of 4 0.69Down
Ovary11 14 of 4 0.20Down
Testis12 10 of 4 0.20Down
Male accessory glands93 34 of 4 1.80Up
Virgin spermatheca144 194 of 4 2.74Up
Mated spermatheca107 184 of 4 2.04None
Adult carcass94 44 of 4 1.80Up
Larval CNS23 54 of 4 0.44Down
Larval Salivary gland299 94 of 4 5.68Up
Larval midgut137 194 of 4 2.61Up
Larval tubule48 34 of 4 0.90None
Larval hindgut153 104 of 4 2.91Up
Larval fat body13 31 of 4 0.30Down
Larval trachea396 564 of 4 7.52Up
Larval carcass52 44 of 4 0.99None
S2 cells (growing)223 54 of 4 4.23Up
Whole fly52 34 of 4

Looking for FBgn0035975. 1 entries matched from 18771, in 3 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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