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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035976 through 18771 annotations produced 1 hits



totem (PGRP-LC):

Annotation Number : CG4432
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035976
Gbrowse : chr3L:9333553-9341434 (+) // 100.0 //
Probeset : 1641723_a_at
Accessions : protein= NP_001163396; /// NP_001163397; /// NP_001163398; /// NP_648298; /// NP_729468; /// NP_996030;, nucleotide= NM_001169925; /// NM_001169926; /// NM_001169927; /// NM_140041; /// NM_168324; /// NM_206308;
Pathway : 0005887 // integral to plasma membrane // non-traceable author statement /// 0016020 // membrane // inferred from electr
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physic
FlyMine data for FBgn0035976.
BDGP gene expression has embryonic in situ data for PGRP-LC: 13 pix of staining in 5 body parts.
TRiP has 1 RNAi stocks for FBgn0035976 available for purchase.
VDRC has 2 RNAi stocks for FBgn0035976 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain17 14 of 4 0.20Down
Head91 64 of 4 1.20None
Eye31 34 of 4 0.41Down
Thoracicoabdominal ganglion15 23 of 4 0.20Down
Salivary gland132 24 of 4 1.72Up
Crop229 84 of 4 3.00Up
Midgut75 44 of 4 1.00None
Tubule88 74 of 4 1.10None
Hindgut240 94 of 4 3.10Up
Heart236 54 of 4 3.08Up
Fat body202 384 of 4 2.63Up
Ovary54 34 of 4 0.70None
Testis5 01 of 4 0.10Down
Male accessory glands21 32 of 4 0.30Down
Virgin spermatheca198 94 of 4 2.58Up
Mated spermatheca160 144 of 4 2.09Up
Adult carcass194 114 of 4 2.50Up
Larval CNS4 10 of 4 0.06Down
Larval Salivary gland185 44 of 4 2.41Up
Larval midgut37 14 of 4 0.49Down
Larval tubule39 34 of 4 0.50Down
Larval hindgut150 84 of 4 1.96Up
Larval fat body84 134 of 4 1.10None
Larval trachea144 354 of 4 1.88Up
Larval carcass119 254 of 4 1.56None
S2 cells (growing)72 64 of 4 0.95None
Whole fly76 74 of 4

Looking for FBgn0035976. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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