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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035977 through 18771 annotations produced 1 hits



PRGP-like (PGRP-LF):

Annotation Number : CG4437
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035977
Gbrowse : chr3L:9342710-9344589 (+) // 100.0 //
Probeset : 1633145_at
Accessions : protein= NP_648299;, nucleotide= NM_140042;
Pathway : 0005887 // integral to plasma membrane // non-traceable author statement /// 0016020 // membrane // inferred from electr
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0008745 // N-acetylmuramoyl-L-alanine amidase acti
FlyMine data for FBgn0035977.
BDGP gene expression has embryonic in situ data for PGRP-LF: 8 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0035977 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 13 of 4 0.10Down
Head116 74 of 4 2.50Up
Eye60 94 of 4 1.28None
Thoracicoabdominal ganglion8 32 of 4 0.20Down
Salivary gland34 33 of 4 0.74None
Crop188 84 of 4 4.00Up
Midgut72 64 of 4 1.50Up
Tubule148 184 of 4 3.10Up
Hindgut180 164 of 4 3.80Up
Heart136 194 of 4 2.90Up
Fat body114 174 of 4 2.43Up
Ovary5 01 of 4 0.10Down
Testis24 04 of 4 0.50Down
Male accessory glands9 11 of 4 0.20Down
Virgin spermatheca78 34 of 4 1.66Up
Mated spermatheca105 44 of 4 2.23Up
Adult carcass122 44 of 4 2.60Up
Larval CNS4 22 of 4 0.11Down
Larval Salivary gland50 94 of 4 1.07None
Larval midgut25 24 of 4 0.53Down
Larval tubule18 14 of 4 0.40Down
Larval hindgut151 334 of 4 3.21None
Larval fat body18 23 of 4 0.40Down
Larval trachea335 1194 of 4 7.10Up
Larval carcass145 264 of 4 3.08Up
S2 cells (growing)260 144 of 4 5.51Up
Whole fly47 34 of 4

Looking for FBgn0035977. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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