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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035978 through 18771 annotations produced 1 hits



UTP-G-1-P uridyiyltransferase (UGP):

Annotation Number : CG4347
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035978
Gbrowse : chr3L:9343966-9351951 (-) // 100.0 //
Probeset : 1633218_a_at
Accessions : protein= NP_001163399; /// NP_001163400; /// NP_648300; /// NP_729469;, nucleotide= NM_001169928; /// NM_001169929; /// NM_140043; /// NM_168325;
Interpro : 0003983 // UTP:glucose-1-phosphate uridylyltransferase activity // inferred from sequence or structural similarity /// 0
FlyMine data for FBgn0035978.
BDGP gene expression has embryonic in situ data for CG4347: 4 pix of staining in 1 body parts.
BioGrid reports that CG4347 interacts with CG4347 CG5111 CG7552 .
VDRC has 2 RNAi stocks for FBgn0035978 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 02 of 4 0.50None
Head21 14 of 4 1.60Up
Eye11 03 of 4 0.83None
Thoracicoabdominal ganglion11 11 of 4 0.80None
Salivary gland9 20 of 4 0.72None
Crop18 13 of 4 1.40None
Midgut10 20 of 4 0.70None
Tubule86 94 of 4 6.40Up
Hindgut20 01 of 4 1.50Up
Heart30 24 of 4 2.29Up
Fat body94 274 of 4 6.98Up
Ovary1 00 of 4 0.10Down
Testis3 10 of 4 0.20Down
Male accessory glands3 10 of 4 0.30Down
Virgin spermatheca146 124 of 410.84Up
Mated spermatheca109 144 of 4 8.14Up
Adult carcass39 44 of 4 3.00Up
Larval CNS11 34 of 4 0.88None
Larval Salivary gland20 34 of 4 1.51None
Larval midgut4 00 of 4 0.32Down
Larval tubule11 02 of 4 0.90None
Larval hindgut10 10 of 4 0.81None
Larval fat body15 30 of 4 1.10None
Larval trachea16 32 of 4 1.23None
Larval carcass15 22 of 4 1.13None
S2 cells (growing)37 14 of 4 2.79Up
Whole fly13 24 of 4

Looking for FBgn0035978. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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