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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035981 through 18771 annotations produced 1 hits



(CG4452):

Annotation Number : CG4452
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035981
Gbrowse : chr3L:9360425-9363398 (+) // 100.0 //
Probeset : 1637940_s_at
Accessions : protein= NP_648303; /// NP_729473; /// NP_729474;, nucleotide= NM_140046; /// NM_168328; /// NM_168329;
FlyMine data for FBgn0035981.
VDRC has 3 RNAi stocks for FBgn0035981 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain239 ± 44 of 4 0.90None
Head191 ± 114 of 4 0.70Down
Eye115 ± 104 of 4 0.43Down
Thoracicoabdominal ganglion198 ± 154 of 4 0.70Down
Salivary gland360 ± 144 of 4 1.35Up
Crop457 ± 164 of 4 1.70Up
Midgut255 ± 104 of 4 1.00None
Tubule284 ± 44 of 4 1.10Up
Hindgut309 ± 74 of 4 1.20None
Heart156 ± 104 of 4 0.59Down
Fat body295 ± 204 of 4 1.11None
Ovary363 ± 104 of 4 1.40Up
Testis158 ± 34 of 4 0.60Down
Male accessory glands261 ± 104 of 4 1.00None
Virgin spermatheca476 ± 184 of 4 1.79Up
Mated spermatheca466 ± 144 of 4 1.75Up
Adult carcass253 ± 164 of 4 1.00None
Larval CNS345 ± 134 of 4 1.29Up
Larval Salivary gland353 ± 184 of 4 1.32Up
Larval midgut238 ± 303 of 4 0.89None
Larval tubule771 ± 184 of 4 2.90Up
Larval hindgut272 ± 204 of 4 1.02None
Larval fat body271 ± 124 of 4 1.00None
Larval trachea224 ± 314 of 4 0.84None
Larval carcass363 ± 704 of 4 1.36None
S2 cells (growing)232 ± 54 of 4 0.87None
Whole fly266 ± 154 of 4

Looking for FBgn0035981. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime