FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0035989 through 18771 annotations produced 2 hits

(CG3967):

Annotation Number : CG3967
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035989
Gbrowse : chr3L:9406695-9419777 (-) // 100.0 //
Probeset : 1630582_s_at
Accessions : protein= NP_648309; /// NP_648310; /// NP_729487; /// NP_729488; /// NP_729489;, nucleotide= NM_140052; /// NM_140053; /// NM_170630; /// NM_170631; /// NM_170632;
FlyMine data for FBgn0035989.
BDGP gene expression has embryonic in situ data for CG3967: 12 pix of staining in 8 body parts.
BioGrid reports that CG3967 interacts with CG6667 .
TRiP has 1 RNAi stocks for FBgn0035989 available for purchase.
VDRC has 3 RNAi stocks for FBgn0035989 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	572 ± 8	4 of 4	9.80	Up
Head	212 ± 10	4 of 4	3.60	Up
Eye	129 ± 3	4 of 4	2.21	Up
Thoracicoabdominal ganglion	728 ± 5	4 of 4	12.50	Up
Salivary gland	104 ± 1	4 of 4	1.79	Up
Crop	57 ± 2	4 of 4	1.00	None
Midgut	49 ± 1	4 of 4	0.90	None
Tubule	68 ± 3	4 of 4	1.20	Up
Hindgut	78 ± 6	4 of 4	1.30	Up
Heart	50 ± 5	4 of 4	0.86	None
Fat body	100 ± 1	4 of 4	1.71	Up
Ovary	11 ± 0	4 of 4	0.20	Down
Testis	17 ± 1	4 of 4	0.30	Down
Male accessory glands	77 ± 7	4 of 4	1.30	None
Virgin spermatheca	42 ± 3	4 of 4	0.72	Down
Mated spermatheca	42 ± 3	4 of 4	0.73	Down
Adult carcass	90 ± 7	4 of 4	1.50	Up
Larval CNS	384 ± 18	4 of 4	6.59	Up
Larval Salivary gland	64 ± 0	4 of 4	1.11	None
Larval midgut	55 ± 3	4 of 4	0.95	None
Larval tubule	260 ± 8	4 of 4	4.50	Up
Larval hindgut	95 ± 2	4 of 4	1.63	Up
Larval fat body	50 ± 2	4 of 4	0.90	None
Larval trachea	53 ± 15	4 of 4	0.91	None
Larval carcass	69 ± 4	4 of 4	1.18	None
S2 cells (growing)	47 ± 2	4 of 4	0.81	None
Whole fly	58 ± 4	4 of 4

(CG3967):

Annotation Number : CG3967
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035989
Gbrowse : chr3L:9407937-9419777 (-) // 100.0 //
Probeset : 1624429_at
Accessions : protein= NP_648309; /// NP_648310; /// NP_729487; /// NP_729488; /// NP_729489;, nucleotide= NM_140052; /// NM_140053; /// NM_170630; /// NM_170631; /// NM_170632;
FlyMine data for FBgn0035989.
BDGP gene expression has embryonic in situ data for CG3967: 12 pix of staining in 8 body parts.
BioGrid reports that CG3967 interacts with CG6667 .
TRiP has 1 RNAi stocks for FBgn0035989 available for purchase.
VDRC has 3 RNAi stocks for FBgn0035989 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	67 ± 2	4 of 4	0.60	Down
Head	47 ± 2	4 of 4	0.40	Down
Eye	55 ± 3	4 of 4	0.51	Down
Thoracicoabdominal ganglion	56 ± 3	4 of 4	0.50	Down
Salivary gland	29 ± 1	3 of 4	0.27	Down
Crop	104 ± 7	4 of 4	1.00	None
Midgut	29 ± 2	4 of 4	0.30	Down
Tubule	14 ± 1	3 of 4	0.10	Down
Hindgut	60 ± 4	4 of 4	0.60	Down
Heart	30 ± 2	4 of 4	0.28	Down
Fat body	20 ± 3	4 of 4	0.19	Down
Ovary	234 ± 10	4 of 4	2.20	Up
Testis	168 ± 9	4 of 4	1.60	Up
Male accessory glands	216 ± 11	4 of 4	2.00	Up
Virgin spermatheca	33 ± 2	4 of 4	0.31	Down
Mated spermatheca	46 ± 6	4 of 4	0.43	Down
Adult carcass	29 ± 1	4 of 4	0.30	Down
Larval CNS	131 ± 12	4 of 4	1.22	Up
Larval Salivary gland	91 ± 11	4 of 4	0.85	None
Larval midgut	32 ± 1	4 of 4	0.30	Down
Larval tubule	14 ± 1	4 of 4	0.10	Down
Larval hindgut	58 ± 5	4 of 4	0.54	Down
Larval fat body	43 ± 10	4 of 4	0.40	Down
Larval trachea	74 ± 12	4 of 4	0.69	Down
Larval carcass	287 ± 12	4 of 4	2.67	Up
S2 cells (growing)	201 ± 11	4 of 4	1.87	Up
Whole fly	107 ± 4	4 of 4

Looking for FBgn0035989. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720