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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035996 through 18771 annotations produced 1 hits



(CG3448):

Annotation Number : CG3448
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035996
Gbrowse : chr3L:9443641-9444658 (-) // 100.0 //
Probeset : 1626220_at
Accessions : protein= NP_648316;, nucleotide= NM_140059;
Pathway : 0005634 // nucleus // inferred from electronic annotation
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic
FlyMine data for FBgn0035996.
VDRC has 2 RNAi stocks for FBgn0035996 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain30 24 of 4 0.50Down
Head46 54 of 4 0.80None
Eye39 14 of 4 0.67Down
Thoracicoabdominal ganglion43 14 of 4 0.70Down
Salivary gland70 43 of 4 1.22None
Crop74 34 of 4 1.30Up
Midgut61 54 of 4 1.10None
Tubule40 34 of 4 0.70Down
Hindgut59 22 of 4 1.00None
Heart47 54 of 4 0.82None
Fat body58 60 of 4 1.01None
Ovary117 34 of 4 2.00Up
Testis36 34 of 4 0.60Down
Male accessory glands137 34 of 4 2.40Up
Virgin spermatheca66 103 of 4 1.14None
Mated spermatheca74 14 of 4 1.28Up
Adult carcass39 51 of 4 0.70Down
Larval CNS64 84 of 4 1.12None
Larval Salivary gland105 84 of 4 1.81Up
Larval midgut24 10 of 4 0.41Down
Larval tubule79 54 of 4 1.40Up
Larval hindgut45 44 of 4 0.78None
Larval fat body102 24 of 4 1.80Up
Larval trachea55 64 of 4 0.96None
Larval carcass34 52 of 4 0.59Down
S2 cells (growing)107 34 of 4 1.84Up
Whole fly58 44 of 4

Looking for FBgn0035996. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime