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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035997 through 18771 annotations produced 1 hits



pho-like (phol):

Annotation Number : CG3445
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035997
Gbrowse : chr3L:9446129-9449356 (-) // 100.0 //
Probeset : 1630080_at
Accessions : protein= NP_648317;, nucleotide= NM_140060;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // traceable author st
FlyMine data for FBgn0035997.
Homophila reports that CG3445 is a close match (2e-11) to human gene EGR2;KROX20 (NP_000390), a gene associated with Charcot-Marie-Tooth disease, type 1D, 607678 (3);Dejerine-Sottas neuropathy, 145900 (3);Neuropathy, congenital hypomyelinating, 1, 605253 (3).
VDRC has 1 RNAi stocks for FBgn0035997 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain146 104 of 4 0.90None
Head66 34 of 4 0.40Down
Eye127 94 of 4 0.77Down
Thoracicoabdominal ganglion98 114 of 4 0.60Down
Salivary gland100 94 of 4 0.61Down
Crop94 94 of 4 0.60Down
Midgut77 64 of 4 0.50Down
Tubule98 44 of 4 0.60Down
Hindgut64 44 of 4 0.40Down
Heart93 54 of 4 0.56Down
Fat body60 54 of 4 0.37Down
Ovary334 44 of 4 2.00Up
Testis33 04 of 4 0.20Down
Male accessory glands135 74 of 4 0.80None
Virgin spermatheca96 54 of 4 0.58Down
Mated spermatheca91 14 of 4 0.55Down
Adult carcass64 44 of 4 0.40Down
Larval CNS183 74 of 4 1.11None
Larval Salivary gland151 54 of 4 0.91None
Larval midgut49 44 of 4 0.30Down
Larval tubule97 64 of 4 0.60Down
Larval hindgut58 44 of 4 0.35Down
Larval fat body93 44 of 4 0.60Down
Larval trachea228 234 of 4 1.38Up
Larval carcass66 24 of 4 0.40Down
S2 cells (growing)135 54 of 4 0.82None
Whole fly166 114 of 4

Looking for FBgn0035997. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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