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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035999 through 18771 annotations produced 1 hits



(CG3552):

Annotation Number : CG3552
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035999
Gbrowse : chr3L:9451011-9452475 (+) // 100.0 //
Probeset : 1638696_a_at
Accessions : protein= NP_001137926; /// NP_648319;, nucleotide= NM_001144454; /// NM_140062;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation
FlyMine data for FBgn0035999.
BDGP gene expression has embryonic in situ data for CG3552: 4 pix of staining in 1 body parts.
BioGrid reports that CG3552 interacts with CG7379 .
VDRC has 2 RNAi stocks for FBgn0035999 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain236 ± 114 of 4 0.80Down
Head154 ± 124 of 4 0.60Down
Eye128 ± 124 of 4 0.46Down
Thoracicoabdominal ganglion180 ± 124 of 4 0.60Down
Salivary gland231 ± 104 of 4 0.83Down
Crop192 ± 14 of 4 0.70Down
Midgut187 ± 64 of 4 0.70Down
Tubule253 ± 94 of 4 0.90Down
Hindgut217 ± 64 of 4 0.80Down
Heart121 ± 94 of 4 0.43Down
Fat body114 ± 114 of 4 0.41Down
Ovary236 ± 64 of 4 0.80Down
Testis1298 ± 494 of 4 4.60Up
Male accessory glands357 ± 384 of 4 1.30None
Virgin spermatheca141 ± 74 of 4 0.51Down
Mated spermatheca128 ± 44 of 4 0.46Down
Adult carcass126 ± 24 of 4 0.50Down
Larval CNS119 ± 54 of 4 0.43Down
Larval Salivary gland90 ± 74 of 4 0.32Down
Larval midgut56 ± 24 of 4 0.20Down
Larval tubule109 ± 24 of 4 0.40Down
Larval hindgut84 ± 94 of 4 0.30Down
Larval fat body175 ± 314 of 4 0.60Down
Larval trachea145 ± 374 of 4 0.52Down
Larval carcass84 ± 174 of 4 0.30Down
S2 cells (growing)105 ± 24 of 4 0.38Down
Whole fly280 ± 104 of 4

Looking for FBgn0035999. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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