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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036000 through 18771 annotations produced 1 hits



(CG3434):

Annotation Number : CG3434
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036000
Gbrowse : chr3L:9452460-9453879 (-) // 100.0 //
Probeset : 1623875_at
Accessions : protein= NP_648320;, nucleotide= NM_140063;
Interpro : "0008479 // queuine tRNA-ribosyltransferase activity // inferred from sequence or structural similarity /// 0008479 // q
FlyMine data for FBgn0036000.
BDGP gene expression has embryonic in situ data for CG3434: 13 pix of staining in 11 body parts.
VDRC has 2 RNAi stocks for FBgn0036000 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain77 ± 14 of 4 0.70None
Head77 ± 04 of 4 0.70None
Eye58 ± 34 of 4 0.53Down
Thoracicoabdominal ganglion65 ± 34 of 4 0.60Down
Salivary gland119 ± 44 of 4 1.08None
Crop82 ± 54 of 4 0.80None
Midgut123 ± 104 of 4 1.10None
Tubule95 ± 54 of 4 0.90Down
Hindgut82 ± 44 of 4 0.70None
Heart73 ± 44 of 4 0.67Down
Fat body88 ± 54 of 4 0.81None
Ovary136 ± 24 of 4 1.20None
Testis69 ± 54 of 4 0.60Down
Male accessory glands118 ± 74 of 4 1.10None
Virgin spermatheca68 ± 74 of 4 0.62Down
Mated spermatheca71 ± 34 of 4 0.65Down
Adult carcass85 ± 104 of 4 0.80None
Larval CNS171 ± 114 of 4 1.56Up
Larval Salivary gland138 ± 84 of 4 1.26None
Larval midgut72 ± 34 of 4 0.66Down
Larval tubule81 ± 54 of 4 0.70None
Larval hindgut86 ± 54 of 4 0.79None
Larval fat body71 ± 64 of 4 0.70Down
Larval trachea103 ± 54 of 4 0.94None
Larval carcass99 ± 74 of 4 0.91None
S2 cells (growing)243 ± 84 of 4 2.22Up
Whole fly109 ± 114 of 4

Looking for FBgn0036000. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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