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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036007 through 18771 annotations produced 1 hits



pathetic (path):

Annotation Number : CG3424
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036007
Gbrowse : chr3L:9487633-9498429 (-) // 100.0 //
Probeset : 1640075_a_at
Accessions : protein= NP_648327; /// NP_729505;, nucleotide= NM_140070; /// NM_168349;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0015171 // amino acid transmembrane transporter activity // inferred from sequence or structural similarity /// 0015171
FlyMine data for FBgn0036007.
BDGP gene expression has embryonic in situ data for CG3424: 64 pix of staining in 29 body parts.
VDRC has 3 RNAi stocks for FBgn0036007 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain385 124 of 4 0.50Down
Head1268 334 of 4 1.50Up
Eye323 714 of 4 0.39Down
Thoracicoabdominal ganglion368 104 of 4 0.40Down
Salivary gland497 314 of 4 0.60Down
Crop338 94 of 4 0.40Down
Midgut618 404 of 4 0.70Down
Tubule1706 1154 of 4 2.00Up
Hindgut474 304 of 4 0.60Down
Heart720 584 of 4 0.86None
Fat body2496 1844 of 4 2.99Up
Ovary722 324 of 4 0.90None
Testis92 124 of 4 0.10Down
Male accessory glands480 244 of 4 0.60Down
Virgin spermatheca2556 1504 of 4 3.06Up
Mated spermatheca2402 1794 of 4 2.88Up
Adult carcass996 234 of 4 1.20Up
Larval CNS958 1724 of 4 1.15None
Larval Salivary gland880 424 of 4 1.06None
Larval midgut128 184 of 4 0.15Down
Larval tubule80 124 of 4 0.10Down
Larval hindgut158 304 of 4 0.19Down
Larval fat body456 494 of 4 0.50Down
Larval trachea79 214 of 4 0.10Down
Larval carcass227 304 of 4 0.27Down
S2 cells (growing)1622 764 of 4 1.94Up
Whole fly834 374 of 4

Looking for FBgn0036007. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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