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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036008 through 18771 annotations produced 1 hits



(CG3408):

Annotation Number : CG3408
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036008
Gbrowse : chr3L:9499911-9502680 (-) // 100.0 //
Probeset : 1631330_at
Accessions : protein= NP_648328;, nucleotide= NM_140071;
Interpro : 0005515 // protein binding // inferred from electronic annotation
FlyMine data for FBgn0036008.
BDGP gene expression has embryonic in situ data for CG3408: 14 pix of staining in 6 body parts.
VDRC has 1 RNAi stocks for FBgn0036008 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain32 ± 14 of 4 0.20Down
Head34 ± 24 of 4 0.20Down
Eye30 ± 24 of 4 0.18Down
Thoracicoabdominal ganglion37 ± 24 of 4 0.20Down
Salivary gland58 ± 54 of 4 0.35Down
Crop48 ± 54 of 4 0.30Down
Midgut41 ± 24 of 4 0.20Down
Tubule60 ± 34 of 4 0.40Down
Hindgut51 ± 34 of 4 0.30Down
Heart35 ± 34 of 4 0.21Down
Fat body44 ± 24 of 4 0.26Down
Ovary361 ± 84 of 4 2.20Up
Testis70 ± 04 of 4 0.40Down
Male accessory glands75 ± 24 of 4 0.40Down
Virgin spermatheca44 ± 34 of 4 0.27Down
Mated spermatheca51 ± 24 of 4 0.31Down
Adult carcass31 ± 34 of 4 0.20Down
Larval CNS979 ± 764 of 4 5.83Up
Larval Salivary gland420 ± 164 of 4 2.51Up
Larval midgut55 ± 14 of 4 0.33Down
Larval tubule181 ± 64 of 4 1.10None
Larval hindgut171 ± 54 of 4 1.02None
Larval fat body200 ± 194 of 4 1.20None
Larval trachea264 ± 364 of 4 1.58Up
Larval carcass166 ± 44 of 4 0.99None
S2 cells (growing)143 ± 64 of 4 0.85None
Whole fly167 ± 94 of 4

Looking for FBgn0036008. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime