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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0036010 through 18771 annotations produced 1 hits

CG12525 (Ir67a):

Annotation Number : CG12525
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036010
Gbrowse : chr3L:9535339-9537099 (-) // 100.0 //
Probeset : 1638638_at
Accessions : protein= NP_648329;, nucleotide= NM_140072;
FlyMine data for FBgn0036010.
VDRC has 2 RNAi stocks for FBgn0036010 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 3.10None
Head1 00 of 4 1.60None
Eye2 00 of 4 3.48None
Thoracicoabdominal ganglion1 01 of 4 2.10None
Salivary gland8 20 of 410.74Up
Crop1 10 of 4 2.00None
Midgut2 10 of 4 3.10None
Tubule1 00 of 4 2.40None
Hindgut1 00 of 4 2.00None
Heart1 00 of 4 1.71None
Fat body1 00 of 4 1.39None
Ovary0 00 of 4 0.30None
Testis1 00 of 4 1.80None
Male accessory glands2 10 of 4 3.30None
Virgin spermatheca2 00 of 4 3.23None
Mated spermatheca1 00 of 4 1.23None
Adult carcass3 20 of 4 4.10None
Larval CNS1 10 of 4 1.58None
Larval Salivary gland1 00 of 4 1.58None
Larval midgut0 00 of 4 1.03None
Larval tubule1 00 of 4 1.50None
Larval hindgut2 10 of 4 2.77None
Larval fat body4 10 of 4 5.60None
Larval trachea1 00 of 4 1.35None
Larval carcass0 00 of 4 0.58None
S2 cells (growing)1 00 of 4 1.74None
Whole fly0 00 of 4

Looking for FBgn0036010. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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